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SCN18_26_2_15_R5_B_scaffold_452

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R5_B_scaffold_452_1
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..830)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00037FF60D
UspA domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_452_2
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1007..4516
DNA (3510bp) protein (1170aa)
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GCH8_9BRAD
indolepyruvate ferredoxin oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_452_3
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4589..5728)
DNA (1140bp) protein (380aa)
NADPH dehydrogenase n=1 Tax=Curvibacter lanceolatus RepID=UPI00035EFB15
NADPH dehydrogenase
NADPH dehydrogenase {ECO:0000313|EMBL:AGW89002.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCN18_26_2_15_R5_B_scaffold_452_4
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5977..6576)
DNA (600bp) protein (200aa)
UPF0301 protein P24_16462 n=1 Tax=Oceanibaculum indicum P24 RepID=K2JVZ8_9PROT
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_452_5
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

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6721..7203
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSY2_9PROT
peroxiredoxin
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_452_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7287..8159
DNA (873bp) protein (291aa)
MycA5 n=1 Tax=Streptomyces flaveolus RepID=H9TEA6_9ACTO
shikimate dehydrogenase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_452_7
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8207..8968)
DNA (762bp) protein (254aa)
Sorbitol dehydrogenase (EC:1.1.1.14)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000372B914
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_452_8
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9087..9707
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036BEF6B
Uncharacterized protein {ECO:0000313|EMBL:KFG68617.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
TetR family transcriptional regulator
SCN18_26_2_15_R5_B_scaffold_452_9
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9704..10843
DNA (1140bp) protein (380aa)
DevC protein n=1 Tax=Dickeya sp. D s0432-1 RepID=U6ZG80_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KHN62553.1}; TaxID=1089444 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya solani.;"
hypothetical protein
SCN18_26_2_15_R5_B_scaffold_452_10
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10840..11520
DNA (681bp) protein (227aa)
ABC transporter, partial n=1 Tax=Dyella ginsengisoli RepID=UPI000373D3D2
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJK23751.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
ABC transporter-like protein
SCN18_26_2_15_R5_B_scaffold_452_11
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11517..12434
DNA (918bp) protein (306aa)
HlyD family secretion protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGT0_PHEZH
HlyD family secretion protein
HlyD family secretion protein {ECO:0000313|EMBL:ACG77296.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCN18_26_2_15_R5_B_scaffold_452_12
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12479..14878)
DNA (2400bp) protein (800aa)
Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQQ3_AFIFE
Competence protein ComEA helix-hairpin-helix repeat region {ECO:0000313|EMBL:EKS30739.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
RNA-binding S1 domain-containing protein
SCN18_26_2_15_R5_B_scaffold_452_13
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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15077..15670
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=1 Tax=Burkholderia graminis C4D1M RepID=B1G830_9BURK
TetR family transcriptional regulator protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_26_2_15_R5_B_scaffold_452_14
SCNPILOT_EXPT_750_BF_Nitrosomonadales_56_52, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15763..16194
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ELU6_BRASB
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_26_2_15_R5_B_scaffold_452_15
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16234..17013)
DNA (780bp) protein (260aa)
Transcriptional regulatory protein chvI n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y4A7_9PROT
putative two-component response regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_452_16
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18367..19053)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036C78E4
Uncharacterized protein {ECO:0000313|EMBL:KJC58450.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
bacterial regulatory s, tetR family protein
SCN18_26_2_15_R5_B_scaffold_452_17
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19222..20550
DNA (1329bp) protein (443aa)
Putative Multidrug resistance protein (HlyD family), emrA-like n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQS2_9BRAD
Putative Multidrug resistance protein (HlyD family), emrA-like {ECO:0000313|EMBL:CCD96549.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
HlyD family multidrug resistance protein
SCN18_26_2_15_R5_B_scaffold_452_18
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20547..22169
DNA (1623bp) protein (541aa)
DSBA oxidoreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003690551
DSBA oxidoreductase {ECO:0000313|EMBL:KJC33656.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
multidrug resistance protein EmrB-like protein
SCN18_26_2_15_R5_B_scaffold_452_19
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22120..23079)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E119B
LysR family transcriptional regulator protein
LysR family transcriptional regulator protein {ECO:0000313|EMBL:AJD46228.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCN18_26_2_15_R5_B_scaffold_452_20
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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23161..24042
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003606079
NmrA-like family protein
NmrA-like family protein {ECO:0000313|EMBL:AJD46227.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCN18_26_2_15_R5_B_scaffold_452_21
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24173..24652
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T9B4_BURPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD21016.1}; Flags: Precursor;; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCN18_26_2_15_R5_B_scaffold_452_22
unknown

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25092..26126
DNA (1035bp) protein (345aa)

This feature has no annotations

SCN18_26_2_15_R5_B_scaffold_452_23
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26123..27307
DNA (1185bp) protein (395aa)
MFS transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B4AB7
MFS transporter {ECO:0000313|EMBL:KKB79039.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
MFS transporter
SCN18_26_2_15_R5_B_scaffold_452_trna_1
unknown

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comp(27516..27589)
DNA (74bp)
transferRNA Arg
SCN18_26_2_15_R5_B_scaffold_452_24
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27802..28263
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00036430EE
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_452_25
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28270..29151
DNA (882bp) protein (294aa)
Putative membrane protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RZW0_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCN18_26_2_15_R5_B_scaffold_452_26
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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29228..29656
DNA (429bp) protein (143aa)
Molecular chaperone (Small heat shock protein)-like protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V5E7_SPHWW
molecular chaperone (small heat shock protein)-like protein
Molecular chaperone (Small heat shock protein)-like protein {ECO:0000313|EMBL:ABQ67513.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_26_2_15_R5_B_scaffold_452_27
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29653..32052
DNA (2400bp) protein (800aa)
lon; DNA-binding ATP-dependent protease La (EC:3.4.21.53)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Lon protease n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7P9_HYPSM
Displaying 28 items

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