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SCN18_25_1_16_R2_B_scaffold_116

Search features with annotation key words

Displaying items 181-210 of 225 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R2_B_scaffold_116_178
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(204652..205629)
DNA (978bp) protein (326aa)
Signal peptide peptidase A, Serine peptidase, MEROPS family S49 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS29_NITHX
signal peptide peptidase SppA, 36K type
Signal peptide peptidase A, Serine peptidase, MEROPS family S49 {ECO:0000313|EMBL:ABE60968.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_116_179
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(205747..208896)
DNA (3150bp) protein (1050aa)
transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EE1E9C
RND transporter {ECO:0000313|EMBL:KJC38428.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
AcrB/AcrD/AcrF family protein
SCN18_25_1_16_R2_B_scaffold_116_180
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(208893..210140)
DNA (1248bp) protein (416aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IK63_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ERF82979.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
multidrag resistance protein
SCN18_25_1_16_R2_B_scaffold_116_181
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(210387..212090)
DNA (1704bp) protein (568aa)
30S ribosomal protein S1 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NV43_AFIFE
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
30S ribosomal protein S1
SCN18_25_1_16_R2_B_scaffold_116_182
CN-SCN_Cytophagaceae_12x, CN-SCN_Cytophagaceae_12x, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(212440..213147)
DNA (708bp) protein (236aa)
Methyltransferase FkbM n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSG3_9BRAD
Methyltransferase FkbM {ECO:0000313|EMBL:EAQ37041.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
methyltransferase FkbM
SCN18_25_1_16_R2_B_scaffold_116_183
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(213174..213812)
DNA (639bp) protein (213aa)
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase {ECO:0000255|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000255|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000255|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000255|HAMAP-Rule:MF_00238}; Short=CMP kinase {ECO:0000255|HAMAP-Rule:MF_00238};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Cytidylate kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=KCY_NITHX
SCN18_25_1_16_R2_B_scaffold_116_184
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(213809..215155)
DNA (1347bp) protein (449aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210};; Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=AROA_NITHX
SCN18_25_1_16_R2_B_scaffold_116_185
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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215329..215739
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TSK8_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE09446.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
SCN18_25_1_16_R2_B_scaffold_116_trna_1
unknown

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215806..215878
DNA (73bp)
transferRNA Ala
SCN18_25_1_16_R2_B_scaffold_116_186
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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216055..217260
DNA (1206bp) protein (402aa)
carnitine dehydratase n=1 Tax=Afipia birgiae RepID=UPI0002E09015
Uncharacterized protein {ECO:0000313|EMBL:EKS34636.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCN18_25_1_16_R2_B_scaffold_116_187
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

217647..218963
DNA (1317bp) protein (439aa)
sn-glycerol-3-phosphate ABC transporter substrate-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003466B29
Glycerol-3-phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIZ37996.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ugpB1; family 1 extracellular solute-binding protein
SCN18_25_1_16_R2_B_scaffold_116_188
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

219049..219948
DNA (900bp) protein (300aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13ER4_RHOPS
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABE37425.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_25_1_16_R2_B_scaffold_116_189
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

219948..220796
DNA (849bp) protein (283aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13ER5_RHOPS
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABE37424.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_25_1_16_R2_B_scaffold_116_190
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

220805..221893
DNA (1089bp) protein (363aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000255|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000255|HAMAP-Rule:MF_01727};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
sn-glycerol-3-phosphate import ATP-binding protein UgpC n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=UGPC_RHOPB
ugpC; glycerol-3-phosphate transporter ATP-binding subunit
SCN18_25_1_16_R2_B_scaffold_116_191
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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222046..222471
DNA (426bp) protein (142aa)
Multiple sugar transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H3Z4_9BRAD
Heat-shock protein Hsp20 {ECO:0000313|EMBL:KIZ47764.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
heat shock protein Hsp20
SCN18_25_1_16_R2_B_scaffold_116_192
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

222532..222798
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13ER8_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE37421.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_25_1_16_R2_B_scaffold_116_193
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

223049..224890
DNA (1842bp) protein (614aa)
Dihydroxy-acid dehydratase {ECO:0000255|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000255|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000255|HAMAP-Rule:MF_00012};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ILVD_NITHX
SCN18_25_1_16_R2_B_scaffold_116_194
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(225060..225461)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRS6_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61071.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_116_195
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(225610..226071)
DNA (462bp) protein (154aa)
Nitrogen regulatory protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FXU8_9BRAD
ptsN; nitrogen regulatory protein
Nitrogen regulatory protein {ECO:0000313|EMBL:BAL73335.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCN18_25_1_16_R2_B_scaffold_116_196
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(226502..227098)
DNA (597bp) protein (199aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSH3_9BRAD
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:EAQ37032.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
sigma 54 modulation protein/ribosomal protein S30EA
SCN18_25_1_16_R2_B_scaffold_116_197
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(227273..228859)
DNA (1587bp) protein (529aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6)
RNA polymerase sigma-54 factor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRS3_NITHX
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_116_198
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(228995..229993)
DNA (999bp) protein (333aa)
ABC transporter related protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRS0_NITHX
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ABE61077.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_116_199
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(230213..230917)
DNA (705bp) protein (235aa)
OstA-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRR9_NITHX
OstA-like protein
OstA-like protein {ECO:0000313|EMBL:ABE61078.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_116_200
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(230914..231675)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRR8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61079.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_116_201
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231915..232535)
DNA (621bp) protein (207aa)
3'-5' exonuclease n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRR7_NITHX
3'-5' exonuclease
3'-5' exonuclease {ECO:0000313|EMBL:ABE61080.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_116_202
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(232730..234712)
DNA (1983bp) protein (661aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q3S4_9DELT
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:EHJ46714.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
lipase 1
SCN18_25_1_16_R2_B_scaffold_116_203
unknown

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comp(234795..234980)
DNA (186bp) protein (62aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_116_204
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

235062..235799
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1S9_9BRAD
NYN domain protein {ECO:0000313|EMBL:CEG09965.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_116_205
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(235805..237067)
DNA (1263bp) protein (421aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138Z4_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE39345.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCN18_25_1_16_R2_B_scaffold_116_206
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

237719..238192
DNA (474bp) protein (158aa)
Displaying items 181-210 of 225 in total

View Taxonomy