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SCN18_25_1_16_R2_B_scaffold_243

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R2_B_scaffold_243_1
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16..714)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FCC52A
Uncharacterized protein {ECO:0000313|EMBL:KEO50978.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
ABC transporter
SCN18_25_1_16_R2_B_scaffold_243_2
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

Not on your lists

comp(711..1433)
DNA (723bp) protein (241aa)
urea short-chain amide or branched-chain amino acid transporter ATP-binding protein n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F3F
urea ABC transporter ATP-binding protein
Urea ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF92085.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
SCN18_25_1_16_R2_B_scaffold_243_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1426..2463)
DNA (1038bp) protein (346aa)
inner-membrane translocator n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F3E
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:AID28511.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
inner-membrane translocator
SCN18_25_1_16_R2_B_scaffold_243_4
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2471..3325)
DNA (855bp) protein (285aa)
ABC transporter permease n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F3D
high-affinity branched-chain amino acid transport system permease
Putative high-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:AEI94081.1}; TaxID=391595 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC; 15278 / OCh 149).;"
SCN18_25_1_16_R2_B_scaffold_243_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3382..4635)
DNA (1254bp) protein (418aa)
extracellular ligand-binding receptor n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F3C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ24613.1}; Flags: Precursor;; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_25_1_16_R2_B_scaffold_243_6
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4703..6226)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FDF3D4
amidase
Amidase {ECO:0000313|EMBL:ACB79480.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCN18_25_1_16_R2_B_scaffold_243_7
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6400..7572)
DNA (1173bp) protein (391aa)
nitrile hydratase regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI000369C287
Putative ABC transporter, substrate binding protein {ECO:0000313|EMBL:CCE06060.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
nitrile hydratase regulator
SCN18_25_1_16_R2_B_scaffold_243_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7742..8191
DNA (450bp) protein (150aa)
Adenylate cyclase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I935_9BRAD
MarR family transcriptional regulator {ECO:0000313|EMBL:KJC51680.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
regulatory protein MarR
SCN18_25_1_16_R2_B_scaffold_243_9
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8782..9567)
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LED9_BURGS
short chain dehydrogenase family protein
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KGE10919.1}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
SCN18_25_1_16_R2_B_scaffold_243_10
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9592..10290)
DNA (699bp) protein (233aa)
demethylmenaquinone methyltransferase n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000364624D
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EIZ81526.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_243_11
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10437..11378
DNA (942bp) protein (314aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12DF5_POLSJ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:KIG03643.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
LysR family transcriptional regulator
SCN18_25_1_16_R2_B_scaffold_243_12
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11397..13115)
DNA (1719bp) protein (573aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:EFH12707.1}; EC=4.2.1.9 {ECO:0000313|EMBL:EFH12707.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJ13_9PROT
SCN18_25_1_16_R2_B_scaffold_243_13
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13112..14053)
DNA (942bp) protein (314aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KJB96530.1}; EC=1.1.1.35 {ECO:0000313|EMBL:KJB96530.1};; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.-)
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XHA9_9BURK
SCN18_25_1_16_R2_B_scaffold_243_14
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14091..15410)
DNA (1320bp) protein (440aa)
General substrate transporter n=1 Tax=Burkholderia sp. RPE64 RepID=R4X2R2_9BURK
general substrate transporter
General substrate transporter {ECO:0000313|EMBL:BAN26881.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
SCN18_25_1_16_R2_B_scaffold_243_15
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15659..16543
DNA (885bp) protein (295aa)
Transcriptional regulator, GntR family/amidohydrolase family protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TWW6_TISMK
Putative 2-pyrone-4,6-dicarboxylic acid hydrolase {ECO:0000313|EMBL:ETY80206.1}; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
transcriptional regulator, GntR family/amidohydrolase family protein
SCN18_25_1_16_R2_B_scaffold_243_16
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16694..17590)
DNA (897bp) protein (299aa)
DNA polymerase III subunit epsilon n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037B0223
DNA polymerase III subunit epsilon
Blr8018 protein {ECO:0000313|EMBL:BAC53283.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCN18_25_1_16_R2_B_scaffold_243_17
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17772..18941)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035F7A73
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHP95097.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
SCN18_25_1_16_R2_B_scaffold_243_18
unknown

Not on your lists

18955..19482
DNA (528bp) protein (176aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_243_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19521..20114
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VPC2_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG12345.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCN18_25_1_16_R2_B_scaffold_243_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20111..21049
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VPC1_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG12344.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCN18_25_1_16_R2_B_scaffold_243_21
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21059..21388)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BZ73_SINMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG06564.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCN18_25_1_16_R2_B_scaffold_243_22
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21388..22788)
DNA (1401bp) protein (467aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BZ72_SINMB
UBA/THIF-type NAD/FAD binding protein
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:AEG06563.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCN18_25_1_16_R2_B_scaffold_243_23
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22785..23966)
DNA (1182bp) protein (394aa)
UPI0003CF6395 related cluster n=1 Tax=unknown RepID=UPI0003CF6395
Uncharacterized protein {ECO:0000313|EMBL:ESY71805.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_243_24
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24053..24433
DNA (381bp) protein (127aa)
Transcriptional regulator, XRE family n=1 Tax=uncultured bacterium RepID=K1YJS4_9BACT
XRE family transcriptional regulator {ECO:0000313|EMBL:KIJ75636.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
XRE family transcriptional regulator
SCN18_25_1_16_R2_B_scaffold_243_25
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24436..25359
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Y397_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIJ75627.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_243_26

Not on your lists

25488..25919
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Dickeya zeae RepID=UPI0003764673
Uncharacterized protein {ECO:0000313|EMBL:BAM62608.1}; TaxID=358574 species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
SCN18_25_1_16_R2_B_scaffold_243_27
unknown

Not on your lists

comp(25863..27164)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037475FB
SCN18_25_1_16_R2_B_scaffold_243_28
unknown

Not on your lists

27954..28307
DNA (354bp) protein (118aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_243_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28523..29980)
DNA (1458bp) protein (486aa)
succinate-semialdehyde dehydrogenase (NADP+) protein (EC:1.2.1.79)
Succinate-semialdehyde dehydrogenase (NADP+) protein {ECO:0000313|EMBL:AGS26238.1}; EC=1.2.1.79 {ECO:0000313|EMBL:AGS26238.1};; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
Succinate-semialdehyde dehydrogenase (NADP+) protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S867_RHIET
SCN18_25_1_16_R2_B_scaffold_243_30
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29995..31038)
DNA (1044bp) protein (348aa)
tartrate dehydrogenase (EC:4.1.1.73)
Putative tartrate dehydrogenase protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AGZ1_RHIET
Putative tartrate dehydrogenase protein {ECO:0000313|EMBL:EGE56242.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Displaying items 1-30 of 61 in total

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