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SCN18_25_1_16_R2_B_scaffold_732

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R2_B_scaffold_732_1
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..850
DNA (849bp) protein (283aa)
Mll1990 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98JD7_RHILO
Nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:KJC56377.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_732_2
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1248..1466)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G384_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KJC59870.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_732_3
unknown

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comp(1547..1696)
DNA (150bp) protein (50aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_732_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1871..2593)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H4T5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF79748.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_732_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3030..4370
DNA (1341bp) protein (447aa)
Twin-arginine translocation pathway signal n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX10_RHOP2
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD07250.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCN18_25_1_16_R2_B_scaffold_732_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4439..5386
DNA (948bp) protein (316aa)
Putative permease protein of sugar ABC transporter n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SHA4_9BRAD
Putative permease protein of sugar ABC transporter {ECO:0000313|EMBL:CCD93581.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
permease of sugar ABC transporter
SCN18_25_1_16_R2_B_scaffold_732_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5383..6297
DNA (915bp) protein (305aa)
ABC transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI000380E66E
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48349.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter permease
SCN18_25_1_16_R2_B_scaffold_732_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6305..7405
DNA (1101bp) protein (367aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EJ39_BRASB
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48350.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ugpC; sn-glycerol 3-phosphate ABC transporter ATP-binding protein
SCN18_25_1_16_R2_B_scaffold_732_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7437..8426
DNA (990bp) protein (330aa)
Putative phosphoglycerate dehydrogenase {ECO:0000313|EMBL:CCE02470.1}; EC=1.1.1.95 {ECO:0000313|EMBL:CCE02470.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
phosphoglycerate dehydrogenase (EC:1.1.1.95)
Putative phosphoglycerate dehydrogenase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T7P3_9BRAD
SCN18_25_1_16_R2_B_scaffold_732_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8502..9926
DNA (1425bp) protein (475aa)
amidase (EC:3.5.1.4)
6-aminohexanoate-cyclic-dimer hydrolase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037A9B2E
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48352.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCN18_25_1_16_R2_B_scaffold_732_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10019..10603
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSI2_NITWN
Uncharacterized protein {ECO:0000313|EMBL:KJC60108.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_732_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10821..11621
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1L4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ33875.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_732_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11686..12096)
DNA (411bp) protein (137aa)
Cupin 2, conserved barrel n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLR0_NITHX
cupin
Cupin 2, conserved barrel {ECO:0000313|EMBL:ABE62837.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_732_14
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12167..12871)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T8M5_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE02802.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
SCN18_25_1_16_R2_B_scaffold_732_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13113..13844
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLQ9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62838.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_732_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13841..14878
DNA (1038bp) protein (346aa)
Allophanate hydrolase subunit 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLQ8_NITHX
allophanate hydrolase subunit 2
Allophanate hydrolase subunit 2 {ECO:0000313|EMBL:ABE62839.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_732_17
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14907..15674
DNA (768bp) protein (256aa)
UPF0271 protein Nham_2042 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Y2042_NITHX
LamB/YcsF family protein
UPF0271 protein Nham_2042 {ECO:0000255|HAMAP-Rule:MF_00691}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_732_18
unknown

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comp(15694..15825)
DNA (132bp) protein (44aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_732_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16013..17623)
DNA (1611bp) protein (537aa)
Putative sulfite reductase (NADPH) {ECO:0000313|EMBL:CCD88619.1}; EC=1.6.2.4 {ECO:0000313|EMBL:CCD88619.1};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
sulfite reductase (EC:1.8.1.2)
Putative sulfite reductase (NADPH) n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S342_9BRAD
SCN18_25_1_16_R2_B_scaffold_732_20
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17620..17814)
DNA (195bp) protein (65aa)
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1)
Ferredoxin--nitrite reductase {ECO:0000313|EMBL:KJC53682.1}; EC=1.7.7.1 {ECO:0000313|EMBL:KJC53682.1};; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
ferredoxin-nitrite reductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D7DE8
Displaying 20 items

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