ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCN18_13_7_16_R5_B_scaffold_815_1

Organism: SCN18_13_7_16_R5_Bosea_sp_LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15_67_8

near complete RP 45 / 55 MC: 5 BSCG 47 / 51 MC: 6 ASCG 10 / 38 MC: 2
Location: comp(3..845)

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator, GntR family domain (EC:2.6.1.1) similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 281.0
  • Bit_score: 365
  • Evalue 1.20e-98
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D44A1C similarity UNIREF
DB: UNIREF100
  • Identity: 79.0
  • Coverage: 281.0
  • Bit_score: 428
  • Evalue 3.10e-117
Putative rhizopine catabolism regulatory protein MocR {ECO:0000313|EMBL:EYR81517.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.2
  • Coverage: 281.0
  • Bit_score: 403
  • Evalue 2.00e-109

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 → Bosea → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 843
ATGGGAAAAGGAACGACACTCGCGGTCGAGGTGAGGCCCGAGGGACGCGAGCCGATCTTCCTGGCGCTCGCCCGCGCCATTATCGAGGAAATCGATCGCGGCCGGCTCAAGCCGGGGAGCCCGCTCCCGGGAACGCGGGCGCTGGCGCGGGCGCTCCAGCTCAACCGCAACACCGTCGATGCCGCCTATCATGAGCTGACCATGCAGGGCTGGCTCGCGACCGAGCCGTCGCGCGGGACCTTCGTCGCGACCGATCTTCCTGACGGTATTCGCGCGCCGCCGCCCGCTCGCCGCGTTCCGGTACCGGAGCCGGCGGCGCCCCGCCCGGCCGGACGTCCGATGCTCAAGCTCTCGGACGGCTATCCCGATGTCCGCCTGCTTCCGACGACGGCCTTCGCGCAGGCGTTCCGGCGGGCCTTGATGAGCCACGCCTTCGCCTCGGGCGGGTCTTACGGCGATCCGCGCGGCAGCGGGATGCTGCGCGAGGCGCTGTCGGCCTATCTTCGCGACGAGCGCGGGCTGGCGAGCTCGGCCGACGACATCCTCGTTGCCAGGGGCAGCCAGATGGCGTTGTTCCTCGCGGCATCCGCGGTCGCCGAACCCGGCACCGCGATCGCCGTCGAGCGGCCGGGCTATCCGCTGGCCTGGTCGGCCTTCCGCGCCGCCGGCATTTCGGTGATCGGCGTCCCCGTCGATGGCGGCGGCATCGATGTCGAGGCACTCGAGAGGCTGGCGAACGGCAACCGCAATCTGCGCGCGGTCTATGTCACGCCGCATCACCAGTACCCGACCACGGTGACGCTGGGCGCCGCCCGGCGCCTGCGCCTGCTGGAGATCGCACGG
PROTEIN sequence
Length: 281
MGKGTTLAVEVRPEGREPIFLALARAIIEEIDRGRLKPGSPLPGTRALARALQLNRNTVDAAYHELTMQGWLATEPSRGTFVATDLPDGIRAPPPARRVPVPEPAAPRPAGRPMLKLSDGYPDVRLLPTTAFAQAFRRALMSHAFASGGSYGDPRGSGMLREALSAYLRDERGLASSADDILVARGSQMALFLAASAVAEPGTAIAVERPGYPLAWSAFRAAGISVIGVPVDGGGIDVEALERLANGNRNLRAVYVTPHHQYPTTVTLGAARRLRLLEIAR