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SCN18_10_11_15_R4_B_scaffold_1166

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_1166_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(108..848)
DNA (741bp) protein (247aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E64F6F
CRISPR-associated protein Cas1
SCN18_10_11_15_R4_B_scaffold_1166_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(906..4253)
DNA (3348bp) protein (1116aa)
CRISPR-associated endonuclease Cas9 {ECO:0000256|HAMAP-Rule:MF_01480}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01480};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036C469A
CRISPR-associated protein
SCN18_10_11_15_R4_B_scaffold_1166_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4750..5355)
DNA (606bp) protein (202aa)
Sarcosine oxidase gamma subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J2PT18_9SPHN
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:EJL30857.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
sarcosine oxidase, gamma subunit
SCN18_10_11_15_R4_B_scaffold_1166_4
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5348..8317)
DNA (2970bp) protein (990aa)
Sarcosine oxidase, alpha subunit family, heterotetrameric form n=1 Tax=Novosphingobium sp. AP12 RepID=J3AEV9_9SPHN
Sarcosine oxidase, alpha subunit family, heterotetrameric form {ECO:0000313|EMBL:EJL30856.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
glycine cleavage T protein (aminomethyl transferase)
SCN18_10_11_15_R4_B_scaffold_1166_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8314..8607)
DNA (294bp) protein (98aa)
soxD; sarcosine oxidase delta subunit (EC:1.5.3.1)
Sarcosine oxidase delta subunit n=1 Tax=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) RepID=B2GHY0_KOCRD
Sarcosine oxidase subunit delta {ECO:0000313|EMBL:KJK44334.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
SCN18_10_11_15_R4_B_scaffold_1166_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8617..9870)
DNA (1254bp) protein (418aa)
Sarcosine oxidase, beta subunit family, heterotetrameric form n=1 Tax=Novosphingobium sp. AP12 RepID=J3AGF6_9SPHN
Sarcosine oxidase, beta subunit family, heterotetrameric form {ECO:0000313|EMBL:EJL30854.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
sarcosine oxidase subunit beta
SCN18_10_11_15_R4_B_scaffold_1166_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10190..10831)
DNA (642bp) protein (214aa)
TetR family transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BYT0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM34450.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
TetR family transcriptional regulator
SCN18_10_11_15_R4_B_scaffold_1166_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11293..12870
DNA (1578bp) protein (526aa)
ABC transporter substrate-binding protein n=1 Tax=Desulfospira joergensenii RepID=UPI0003B3021E
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESH94797.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
oppA; Oligopeptide ABC transporter
SCN18_10_11_15_R4_B_scaffold_1166_9
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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13002..13973
DNA (972bp) protein (324aa)
ABC transporter permease n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E20B13
Putative oligopeptide ABC transporter, permease protein AppB {ECO:0000313|EMBL:EHL98905.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
ABC transporter permease
SCN18_10_11_15_R4_B_scaffold_1166_10
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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13973..14893
DNA (921bp) protein (307aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLQ4_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EFH11792.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Oligopeptide ABC superfamily transporter membrane protein
SCN18_10_11_15_R4_B_scaffold_1166_11
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14897..15883
DNA (987bp) protein (329aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E67BA3
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11793.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
oligopeptide/dipeptide ABC transporter ATPase
SCN18_10_11_15_R4_B_scaffold_1166_12
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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15880..16884
DNA (1005bp) protein (335aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00031E5A8C
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH11794.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
peptide ABC transporter ATP-binding protein
SCN18_10_11_15_R4_B_scaffold_1166_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17068..18069
DNA (1002bp) protein (334aa)
Zn-dependent dipeptidase, microsomal dipeptidase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AGE7_9SPHN
Zn-dependent dipeptidase, microsomal dipeptidase {ECO:0000313|EMBL:EJL30844.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
peptidase M19
SCN18_10_11_15_R4_B_scaffold_1166_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18122..19363
DNA (1242bp) protein (414aa)
Amidohydrolase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV20_CAUSK
Scaffold45-2, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29903.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
amidohydrolase
SCN18_10_11_15_R4_B_scaffold_1166_15
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19461..19640)
DNA (180bp) protein (60aa)
Electron transfer flavoprotein, alpha subunit n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AM37_MARMM
etfA-1; electron-transport flavoprotein subunit alpha 1
Electron-transport flavoprotein subunit alpha 1 {ECO:0000313|EMBL:AJD43014.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Displaying 15 items

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