ggKbase home page

SCN18_10_11_15_R4_B_scaffold_1653

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_1653_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(294..959)
DNA (666bp) protein (222aa)
3-oxoacid CoA-transferase, B subunit {ECO:0000313|EMBL:EFH13080.1}; EC=2.8.3.- {ECO:0000313|EMBL:EFH13080.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
3-oxoacid CoA-transferase subunit B (EC:2.8.3.6)
3-oxoadipate CoA-transferase subunit B n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DB3C05
SCN18_10_11_15_R4_B_scaffold_1653_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(952..1647)
DNA (696bp) protein (232aa)
3-oxoadipate CoA-transferase subunit A {ECO:0000313|EMBL:ESR23355.1}; EC=2.8.3.6 {ECO:0000313|EMBL:ESR23355.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
3-oxoacid CoA-transferase subunit A (EC:2.8.3.6)
3-oxoadipate CoA-transferase subunit A n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RJA4_9RHIZ
SCN18_10_11_15_R4_B_scaffold_1653_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1644..2486)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YUE6_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD58195.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
SCN18_10_11_15_R4_B_scaffold_1653_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2483..3316)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YUE6_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD58195.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
SCN18_10_11_15_R4_B_scaffold_1653_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3403..4026
DNA (624bp) protein (208aa)
Putative glutathione S-transferase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IEQ6_BORPD
glutathione S-transferase
Putative glutathione S-transferase {ECO:0000313|EMBL:CAP44887.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCN18_10_11_15_R4_B_scaffold_1653_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4031..5002)
DNA (972bp) protein (324aa)
Fumarylacetoacetate hydrolase family protein n=4 Tax=Xanthomonas campestris pv. campestris RepID=B0RVN5_XANCB
uptA; fumarylacetoacetate hydrolase
Strain LMCP11 contig_13, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27186.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
SCN18_10_11_15_R4_B_scaffold_1653_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5010..6176)
DNA (1167bp) protein (389aa)
hmgA; homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase {ECO:0000313|EMBL:ACI99891.1}; EC=1.13.11.5 {ECO:0000313|EMBL:ACI99891.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IU14_RHOCS
SCN18_10_11_15_R4_B_scaffold_1653_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6378..7364
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CWA9_9RHIZ
Putative dehydrogenase {ECO:0000313|EMBL:EDQ35494.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
oxidoreductase domain-containing protein
SCN18_10_11_15_R4_B_scaffold_1653_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7532..7996
DNA (465bp) protein (155aa)
Lactoylglutathione lyase and related lyase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8C8_PELHB
lactoylglutathione lyase and related lyase
Lactoylglutathione lyase and related lyase {ECO:0000313|EMBL:AEQ52372.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_10_11_15_R4_B_scaffold_1653_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8112..8615
DNA (504bp) protein (168aa)
AIG2 family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8C7_PELHB
AIG2 family protein
AIG2 family protein {ECO:0000313|EMBL:AEQ52371.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_10_11_15_R4_B_scaffold_1653_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8653..9537
DNA (885bp) protein (295aa)
ABC transporter substrate-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8C6_PELHB
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AEQ52370.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_10_11_15_R4_B_scaffold_1653_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9542..10390
DNA (849bp) protein (283aa)
Putative ABC transporter, permease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8C5_PELHB
putative ABC transporter, permease
Putative ABC transporter, permease {ECO:0000313|EMBL:AEQ52369.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_10_11_15_R4_B_scaffold_1653_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10387..11181
DNA (795bp) protein (265aa)
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8C4_PELHB
ectoine/hydroxyectoine ABC transporter ATP-binding protein
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AEQ52368.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_10_11_15_R4_B_scaffold_1653_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11194..11865
DNA (672bp) protein (224aa)
Transcriptional regulator, GntR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8C3_PELHB
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AEQ52367.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCN18_10_11_15_R4_B_scaffold_1653_15
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11865..12161
DNA (297bp) protein (99aa)
SCN18_10_11_15_R4_B_scaffold_1653_16
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12187..14046)
DNA (1860bp) protein (620aa)
AMP-dependent synthetase and ligase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J6B9_POLGS
AMP-dependent synthetase/ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADZ71292.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_10_11_15_R4_B_scaffold_1653_17
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14188..14295
DNA (108bp) protein (36aa)
Displaying 17 items

View Taxonomy