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SCN18_10_11_15_R4_B_scaffold_515

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_515_trna_1
unknown

Not on your lists

1221..1294
DNA (74bp)
transferRNA Met
SCN18_10_11_15_R4_B_scaffold_515_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1659..3167)
DNA (1509bp) protein (503aa)
nitrite reductase, copper-containing protein (EC:1.7.2.1)
Nitrite reductase, copper-containing protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MEX9_9RHIZ
Nitrite reductase {ECO:0000313|EMBL:EZQ13050.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCN18_10_11_15_R4_B_scaffold_515_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3298..5400)
DNA (2103bp) protein (701aa)
Stackhouse genomic scaffold, scaffold_160 n=1 Tax=Chondrus crispus RepID=R7QAP9_CHOCR
Stackhouse genomic scaffold, scaffold_160 {ECO:0000313|EMBL:CDF34471.1}; TaxID=2769 species="Eukaryota; Rhodophyta; Florideophyceae; Gigartinales; Gigartinaceae; Chondrus.;" source="Chondrus crispus (Carrageen Irish moss) (Polymorpha crispa).;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_515_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5469..6518)
DNA (1050bp) protein (350aa)
fbpC1; Fe(3+) ions import ATP-binding protein FbpC 1 (EC:3.6.3.30)
ABC transporter n=1 Tax=Methylopila sp. M107 RepID=UPI00035E404B
Uncharacterized protein {ECO:0000313|EMBL:KKN13534.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_10_11_15_R4_B_scaffold_515_4
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6515..8068)
DNA (1554bp) protein (518aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000363211E
iron ABC transporter permease
Iron ABC transporter, permease protein {ECO:0000313|EMBL:EJL00887.1}; TaxID=1038921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis subsp. aureofaciens 30-84.;"
SCN18_10_11_15_R4_B_scaffold_515_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8065..9093)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003764C0A
Putative iron-binding periplasmic protein {ECO:0000313|EMBL:ETK16164.1}; TaxID=1284393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH4.;"
iron ABC transporter substrate-binding protein
SCN18_10_11_15_R4_B_scaffold_515_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9328..10266)
DNA (939bp) protein (313aa)
DMSO reductase anchor subunit (DmsC) n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKV8_MESCW
DMSO reductase anchor subunit DmsC
DMSO reductase anchor subunit (DmsC) {ECO:0000313|EMBL:ADV15022.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCN18_10_11_15_R4_B_scaffold_515_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10272..11009)
DNA (738bp) protein (246aa)
UPI0003CE8615 related cluster n=1 Tax=unknown RepID=UPI0003CE8615
Ferredoxin {ECO:0000313|EMBL:ESY81417.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
SCN18_10_11_15_R4_B_scaffold_515_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11006..13939)
DNA (2934bp) protein (978aa)
UPI0003CDDDF0 related cluster n=1 Tax=unknown RepID=UPI0003CDDDF0
Formate dehydrogenase {ECO:0000313|EMBL:ESY74270.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
molybdopterin oxidoreductase Fe4S4 region
SCN18_10_11_15_R4_B_scaffold_515_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13936..14109)
DNA (174bp) protein (58aa)
SCN18_10_11_15_R4_B_scaffold_515_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14212..15096
DNA (885bp) protein (295aa)
UPI0003CF8CDE related cluster n=1 Tax=unknown RepID=UPI0003CF8CDE
LysR family transcriptional regulator {ECO:0000313|EMBL:ESY94752.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
transcriptional regulator
SCN18_10_11_15_R4_B_scaffold_515_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15107..18571)
DNA (3465bp) protein (1155aa)
2-oxoacid ferredoxin oxidoreductase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MIM1_9RHIZ
2-oxoacid ferredoxin oxidoreductase {ECO:0000313|EMBL:EKF20555.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
2-oxoacid ferredoxin oxidoreductase
SCN18_10_11_15_R4_B_scaffold_515_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18715..19188
DNA (474bp) protein (158aa)
Transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MEH2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EKF20556.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
transcriptional regulator
SCN18_10_11_15_R4_B_scaffold_515_trna_2
unknown

Not on your lists

19268..19339
DNA (72bp)
transferRNA Gln
SCN18_10_11_15_R4_B_scaffold_515_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19364..20221)
DNA (858bp) protein (286aa)
Xanthine dehydrogenase accessory protein XdhC n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HN53_9RHIZ
Xanthine dehydrogenase accessory protein XdhC {ECO:0000313|EMBL:EHK57847.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
molybdenum cofactor sulfurylase
SCN18_10_11_15_R4_B_scaffold_515_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20218..22584)
DNA (2367bp) protein (789aa)
xanthine dehydrogenase molybdopterin binding subunit (EC:1.17.1.4)
UPI0003CECAF3 related cluster n=1 Tax=unknown RepID=UPI0003CECAF3
Aldehyde oxidase {ECO:0000313|EMBL:ESW86886.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCN18_10_11_15_R4_B_scaffold_515_15
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22586..24064)
DNA (1479bp) protein (493aa)
Xanthine dehydrogenase, xdhA n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HN51_9RHIZ
Xanthine dehydrogenase, xdhA {ECO:0000313|EMBL:EHK57845.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
molybdopterin dehydrogenase
SCN18_10_11_15_R4_B_scaffold_515_16
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24109..24468)
DNA (360bp) protein (120aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU361270};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hydroxyisourate hydrolase (EC:3.5.2.17)
5-hydroxyisourate hydrolase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LKH4_9RHIZ
SCN18_10_11_15_R4_B_scaffold_515_17
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24657..26090
DNA (1434bp) protein (478aa)
polysaccharide deacetylase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FE7D16
Polysaccharide deacetylase {ECO:0000313|EMBL:EXL02528.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
polysaccharide deacetylase
SCN18_10_11_15_R4_B_scaffold_515_18
SCNPILOT_CONT_750_P_Mesorhizobium_63_10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26099..26938
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M7P0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF18231.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
putative allantoin catabolism protein
SCN18_10_11_15_R4_B_scaffold_515_19
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26935..27429
DNA (495bp) protein (165aa)
ureidoglycolate hydrolase (EC:3.5.3.19)
Ureidoglycolate lyase {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913}; EC=4.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913};; Ureidoglycolatase {ECO:0000256|HAMAP-Rule:MF_00616}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Ureidoglycolate lyase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXM0_METNO
SCN18_10_11_15_R4_B_scaffold_515_20
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27438..28031
DNA (594bp) protein (198aa)
cytidine deaminase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030E01DC
Uncharacterized protein {ECO:0000313|EMBL:CDX53991.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
CMP/dCMP deaminase zinc-binding protein
SCN18_10_11_15_R4_B_scaffold_515_21
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28028..28567)
DNA (540bp) protein (180aa)
UPI0003CE6EBA related cluster n=1 Tax=unknown RepID=UPI0003CE6EBA
Gluconokinase {ECO:0000313|EMBL:ESY62882.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
thermoresistant glucokinase family carbohydrate kinase
SCN18_10_11_15_R4_B_scaffold_515_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28585..29910)
DNA (1326bp) protein (442aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
xylose isomerase (EC:5.3.1.5)
PREDICTED: xylose isomerase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1624F
SCN18_10_11_15_R4_B_scaffold_515_23
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29907..31361)
DNA (1455bp) protein (485aa)
Xylulokinase {ECO:0000313|EMBL:CDX37984.1}; EC=2.7.1.- {ECO:0000313|EMBL:CDX37984.1};; EC=2.7.1.17 {ECO:0000313|EMBL:CDX37984.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
xylB; xylulose kinase (EC:2.7.1.17)
xylulokinase n=1 Tax=Hoeflea sp. 108 RepID=UPI000372B904
SCN18_10_11_15_R4_B_scaffold_515_24
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31509..32840)
DNA (1332bp) protein (444aa)
UPI0003D04003 related cluster n=1 Tax=unknown RepID=UPI0003D04003
Uncharacterized protein {ECO:0000313|EMBL:CDX15140.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_515_25
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33002..34168
DNA (1167bp) protein (389aa)
6-phosphofructokinase {ECO:0000313|EMBL:EKF17197.1}; EC=2.7.1.11 {ECO:0000313|EMBL:EKF17197.1};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MJ72_9RHIZ
SCN18_10_11_15_R4_B_scaffold_515_26
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34184..34672)
DNA (489bp) protein (163aa)
DNA starvation/stationary phase protection protein Dps n=1 Tax=Hoeflea sp. 108 RepID=UPI000361DFE5
DNA-binding protein {ECO:0000313|EMBL:EXL02533.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
dps; DNA protection during starvation protein
SCN18_10_11_15_R4_B_scaffold_515_27
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34702..35691)
DNA (990bp) protein (330aa)
LysR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F62D6
transcriptional regulator
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:AID33983.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCN18_10_11_15_R4_B_scaffold_515_28
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35822..37039
DNA (1218bp) protein (406aa)
UPI0003CFEA1A related cluster n=1 Tax=unknown RepID=UPI0003CFEA1A
Cysteine desulfurase {ECO:0000313|EMBL:ESZ33976.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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