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SCN18_10_11_15_R1_B_scaffold_723

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_723_1
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..166)
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368C63F
Methyltransferase {ECO:0000313|EMBL:CPR22472.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
methyltransferase
SCN18_10_11_15_R1_B_scaffold_723_2
SCNPILOT_CONT_750_P_Mesorhizobium_63_10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(163..426)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUN3_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ24663.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_10_11_15_R1_B_scaffold_723_3
unknown

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674..844
DNA (171bp) protein (57aa)

This feature has no annotations

SCN18_10_11_15_R1_B_scaffold_723_4
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(841..1443)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6Y7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC58971.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_723_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1475..2359)
DNA (885bp) protein (295aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
3-hydroxyisobutyrate dehydrogenase n=2 Tax=Bradyrhizobiaceae RepID=F7QLU0_9BRAD
3-hydroxyisobutyrate dehydrogenase
SCN18_10_11_15_R1_B_scaffold_723_6
SCNPILOT_CONT_750_P_Mesorhizobium_63_10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2363..3247)
DNA (885bp) protein (295aa)
mmsB; putative 3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BW94_RHILV
SCN18_10_11_15_R1_B_scaffold_723_7
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3295..4737)
DNA (1443bp) protein (481aa)
Putative FAD-binding dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JR28_9PROT
Putative FAD-binding dehydrogenase {ECO:0000313|EMBL:EKE76982.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
putative D-lactate dehydrogenase
SCN18_10_11_15_R1_B_scaffold_723_8
unknown

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comp(4964..5254)
DNA (291bp) protein (97aa)

This feature has no annotations

SCN18_10_11_15_R1_B_scaffold_723_9
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5588..7954
DNA (2367bp) protein (789aa)
Serine/threonine-protein kinase-like domain protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JB70_HYPSM
Serine/threonine protein kinase {ECO:0000313|EMBL:CPR16317.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Serine/threonine-protein kinase-like domain-containing protein
SCN18_10_11_15_R1_B_scaffold_723_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8135..9253
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
DNA polymerase III subunit beta n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAM9_9RHIZ
DNA polymerase III subunit beta
SCN18_10_11_15_R1_B_scaffold_723_11
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9268..10446
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036023A1
chromosome segregation protein SMC
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|SAAS:SAAS00122784}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_723_12
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10611..13067
DNA (2457bp) protein (819aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
DNA gyrase subunit B n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9G5_9RHIZ
gyrB; DNA gyrase subunit B
SCN18_10_11_15_R1_B_scaffold_723_13
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13211..13516
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SK23_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB50470.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_723_14
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13657..14445
DNA (789bp) protein (263aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QQN3_RALPI
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:AGW93330.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCN18_10_11_15_R1_B_scaffold_723_15
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14521..15606)
DNA (1086bp) protein (362aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JT16_HYPDA
Uncharacterized protein {ECO:0000313|EMBL:CPR21888.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_723_16
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15697..19185)
DNA (3489bp) protein (1163aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD46_9RHIZ
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_723_17
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19249..19434)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037107AF
disulfide bond formation protein DsbD
Disulfide bond formation protein DsbD {ECO:0000313|EMBL:AHB47986.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_723_18
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19531..20088)
DNA (558bp) protein (186aa)
Putative disulfide bond formation protein D n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J953_HYPSM
Disulfide bond formation protein DsbD {ECO:0000313|EMBL:CPR22437.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
disulfide bond formation protein D
SCN18_10_11_15_R1_B_scaffold_723_19
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20096..20797)
DNA (702bp) protein (234aa)
DSBA oxidoreductase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAG4_9RHIZ
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:AGK59262.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_10_11_15_R1_B_scaffold_723_20
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21077..21529)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TP11_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EMD83486.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
nuclear protein SET
SCN18_10_11_15_R1_B_scaffold_723_21
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21941..22987
DNA (1047bp) protein (349aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380EC8A
tetraacyldisaccharide 4'-kinase
Displaying 21 items

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