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SCN18_10_11_15_R1_B_scaffold_894

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_894_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1090
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Guillardia theta CCMP2712 RepID=L1IEH2_GUITH
Uncharacterized protein {ECO:0000313|EMBL:EKX34274.1, ECO:0000313|EnsemblProtists:EKX34274}; TaxID=905079 species="Eukaryota; Cryptophyta; Pyrenomonadales; Geminigeraceae; Guillardia.;" source="Guillardia theta CCMP2712.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_894_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1097..1825)
DNA (729bp) protein (243aa)
Candidate oxidoreductase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZ14_RAMTT
oxidoreductase
Candidate oxidoreductase {ECO:0000313|EMBL:AEG92002.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_10_11_15_R1_B_scaffold_894_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1897..2997
DNA (1101bp) protein (367aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
Methylthioribose-1-phosphate isomerase n=2 Tax=Labrenzia RepID=U7GKB6_9RHOB
mtnA; 5-methylthioribose-1-phosphate isomerase (MTNA)
SCN18_10_11_15_R1_B_scaffold_894_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3004..3738)
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSG5_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ24259.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_10_11_15_R1_B_scaffold_894_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3891..4802)
DNA (912bp) protein (304aa)
SAM-dependent methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SB85_9RHIZ
SAM-dependent methyltransferase {ECO:0000313|EMBL:CPR16406.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SAM-dependent methyltransferase
SCN18_10_11_15_R1_B_scaffold_894_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4989..7721
DNA (2733bp) protein (911aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035C94CC
Uncharacterized protein {ECO:0000313|EMBL:KFG69798.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_894_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7809..7979)
DNA (171bp) protein (57aa)
Components of type IV pilus, pilin subunit n=2 Tax=Agrobacterium RepID=Q7D1X1_AGRT5
pilin subunit
Components of type IV pilus, pilin subunit {ECO:0000313|EMBL:EGL66954.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
SCN18_10_11_15_R1_B_scaffold_894_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8300..8800
DNA (501bp) protein (167aa)
Prepilin peptidase CpaA n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGQ3_9BRAD
Prepilin peptidase CpaA {ECO:0000313|EMBL:ERF83621.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
peptidase A24A, prepilin type IV
SCN18_10_11_15_R1_B_scaffold_894_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9108..9893
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000365C505
Flp pilus assembly protein CpaB {ECO:0000313|EMBL:CPR18911.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Flp pilus assembly protein CpaB
SCN18_10_11_15_R1_B_scaffold_894_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10042..11796
DNA (1755bp) protein (585aa)
Type II and III secretion system protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD10_9RHIZ
type II and III secretion system protein
Type II and III secretion system protein {ECO:0000313|EMBL:AHB47945.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_894_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11824..12567
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036D01A9
Pilus (Caulobacter type) biogenesis lipoprotein CpaD {ECO:0000313|EMBL:CPR18915.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
pilus (Caulobacter type) biogenesis lipoprotein CpaD
SCN18_10_11_15_R1_B_scaffold_894_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12633..13907
DNA (1275bp) protein (425aa)
CtpF protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBN5_9RHIZ
CtpF protein
CtpF protein {ECO:0000313|EMBL:AHB47943.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_894_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13920..15410
DNA (1491bp) protein (497aa)
CpaF protein secretory protein kinase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378FA01
cpaF; secretory protein kinase, cpaF
Secretory protein kinase, cpaF {ECO:0000313|EMBL:CCB63851.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_10_11_15_R1_B_scaffold_894_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15403..16401
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000381A4FC
Secretion system protein F {ECO:0000313|EMBL:CPR18923.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
type II secretion system protein F
SCN18_10_11_15_R1_B_scaffold_894_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16452..17426
DNA (975bp) protein (325aa)
Type II secretion system protein F n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZH3_9RHIZ
Type II secretion system protein {ECO:0000313|EMBL:CPR18925.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
type II secretion system protein F
SCN18_10_11_15_R1_B_scaffold_894_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17645..18592
DNA (948bp) protein (316aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
FAD dependent oxidoreductase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UAB9_METS4
glpD; glycerol-3-phosphate dehydrogenase
Displaying 16 items

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