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SCN18_10_11_15_R1_B_scaffold_1148

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_1148_1
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..174)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EHF1_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ35595.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCN18_10_11_15_R1_B_scaffold_1148_2
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(193..681)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000375BD86
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB47260.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_1148_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

733..1503
DNA (771bp) protein (257aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Endonuclease III n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q982_RHOPT
endonuclease III
SCN18_10_11_15_R1_B_scaffold_1148_4
SCNPILOT_CONT_750_P_Aeromonadales_61_5_9, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1503..2585
DNA (1083bp) protein (361aa)
Putative rRNA (Guanine-N(2)-)-methyltransferase {ECO:0000313|EMBL:CBS86431.1}; EC=2.1.1.171 {ECO:0000313|EMBL:CBS86431.1};; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Putative rRNA (Guanine-N(2)-)-methyltransferase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z657_AZOL4
putative rRNA (guanine-N(2)-)-methyltransferase
SCN18_10_11_15_R1_B_scaffold_1148_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2706..3482)
DNA (777bp) protein (259aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Imidazole glycerol phosphate synthase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9Y3_9RHIZ
imidazole glycerol phosphate synthase
SCN18_10_11_15_R1_B_scaffold_1148_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3667..3894)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S8U9_9RHIZ
hypothetical protein
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_1148_7
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3891..4637)
DNA (747bp) protein (249aa)
Septum formation protein Maf n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9P4_9RHIZ
Maf-like protein BN1229_1986 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
septum formation protein Maf
SCN18_10_11_15_R1_B_scaffold_1148_8
Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5046..5639)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003703FAF
50S ribosomal protein acetyltransferase
50S ribosomal protein acetyltransferase {ECO:0000313|EMBL:BAQ15599.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
SCN18_10_11_15_R1_B_scaffold_1148_9
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5678..5950)
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQA6_HYPDA
50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_10_11_15_R1_B_scaffold_1148_10
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6020..6337)
DNA (318bp) protein (106aa)
50S ribosomal protein L21 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQA5_HYPDA
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
50S ribosomal protein L21
SCN18_10_11_15_R1_B_scaffold_1148_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6579..7217
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EAF4_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ33148.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCN18_10_11_15_R1_B_scaffold_1148_12
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7295..8089
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037FC5EB
methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:CAE27056.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCN18_10_11_15_R1_B_scaffold_1148_13
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8106..8564)
DNA (459bp) protein (153aa)
Putative histone acetyltransferase (HAT) {ECO:0000313|EMBL:CCE06399.1}; EC=2.3.1.- {ECO:0000313|EMBL:CCE06399.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative histone acetyltransferase (HAT) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TIW1_9BRAD
acetyltransferase
SCN18_10_11_15_R1_B_scaffold_1148_14
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8608..9531)
DNA (924bp) protein (308aa)
hbdA; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:CCB68091.1}; EC=1.1.1.157 {ECO:0000313|EMBL:CCB68091.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003760BFD
SCN18_10_11_15_R1_B_scaffold_1148_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9557..10501)
DNA (945bp) protein (315aa)
electron transfer flavoprotein subunit beta n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000376A140
electron transfer flavoprotein subunit beta
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:AHB47525.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_1148_16
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10501..11253)
DNA (753bp) protein (251aa)
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BC81_9RHIZ
electron transfer flavoprotein alpha/beta-subunit
Electron transfer flavoprotein alpha/beta-subunit {ECO:0000313|EMBL:AGK59857.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_10_11_15_R1_B_scaffold_1148_17
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11639..12907
DNA (1269bp) protein (423aa)
formyl-CoA transferase (EC:2.8.3.16)
Putative Formyl-CoA transferase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3RBQ2_CUPTR
Formyl-CoA transferase {ECO:0000313|EMBL:EYS81781.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
SCN18_10_11_15_R1_B_scaffold_1148_18
unknown

Not on your lists

comp(12750..13349)
DNA (600bp) protein (200aa)

This feature has no annotations

SCN18_10_11_15_R1_B_scaffold_1148_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13539..13823
DNA (285bp) protein (95aa)
Porin n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U6J6_SINMW
porin
Porin {ECO:0000313|EMBL:ABR59276.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCN18_10_11_15_R1_B_scaffold_1148_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13890..14837)
DNA (948bp) protein (316aa)
Tyrosine recombinase XerC n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7G6_9RHIZ
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808, ECO:0000313|EMBL:CPR17164.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
integrase family protein
SCN18_10_11_15_R1_B_scaffold_1148_21
unknown

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14934..15020
DNA (87bp) protein (29aa)

This feature has no annotations

Displaying 21 items

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