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SCN18_10_11_15_R1_B_scaffold_1376

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_1376_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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456..1343
DNA (888bp) protein (296aa)
Putative 6-phosphogluconate dehydrogenase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZA68_AZOL4
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:KFC63668.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative 6-phosphogluconate dehydrogenase
SCN18_10_11_15_R1_B_scaffold_1376_2
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1392..2729
DNA (1338bp) protein (446aa)
3-carboxy-cis,cis-muconate cycloisomerase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BSS8_DELAS
3-carboxy-cis,cis-muconate cycloisomerase
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:ABX34083.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCN18_10_11_15_R1_B_scaffold_1376_3
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2860..3630)
DNA (771bp) protein (257aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
tRNA pseudouridine synthase A n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD75_9RHIZ
tRNA pseudouridine synthase A
SCN18_10_11_15_R1_B_scaffold_1376_4
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3644..4420)
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJ54_XANP2
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS68047.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R1_B_scaffold_1376_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4544..5764)
DNA (1221bp) protein (407aa)
major facilitator transporter n=1 Tax=Rhizobium gallicum RepID=UPI00036F8939
Major Facilitator Superfamily protein {ECO:0000313|EMBL:CEJ13297.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
major facilitator superfamily protein
SCN18_10_11_15_R1_B_scaffold_1376_6
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

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comp(6014..6973)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003672D26
metal-chelation protein CHAD
Metal-chelation protein CHAD {ECO:0000313|EMBL:AHB48780.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_1376_7
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7093..7710)
DNA (618bp) protein (206aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826, ECO:0000313|EMBL:CPR19746.1};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Thiamine-phosphate synthase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFM8_9RHIZ
thiamine-phosphate synthase
SCN18_10_11_15_R1_B_scaffold_1376_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7722..8561)
DNA (840bp) protein (280aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
thiazole synthase n=1 Tax=Xanthobacteraceae RepID=UPI00035C1C7C
thiG; thiazole synthase
SCN18_10_11_15_R1_B_scaffold_1376_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8561..8905)
DNA (345bp) protein (115aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B670_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KAI95160.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
thiamine biosynthesis protein ThiS
SCN18_10_11_15_R1_B_scaffold_1376_10
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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9102..9947
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KH98_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC01325.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_1376_11
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(9958..10263)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0002E25888
Antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ACS22840.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCN18_10_11_15_R1_B_scaffold_1376_12
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10305..11018)
DNA (714bp) protein (238aa)
ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Ribonuclease PH n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXJ9_HYPDA
SCN18_10_11_15_R1_B_scaffold_1376_13
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11273..12112
DNA (840bp) protein (280aa)
Type 11 methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SC46_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR19509.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
type 11 methyltransferase
SCN18_10_11_15_R1_B_scaffold_1376_14
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12102..12878)
DNA (777bp) protein (259aa)
Aspartyl-tRNA(Asn) amidotransferase subunit A {ECO:0000313|EMBL:CPR22591.1}; EC=6.3.5.6 {ECO:0000313|EMBL:CPR22591.1};; EC=6.3.5.7 {ECO:0000313|EMBL:CPR22591.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Amidase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQW2_HYPDA
amidase
Displaying 14 items

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