ggKbase home page

SCN18_10_11_15_R1_B_scaffold_1418

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_1418_1
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..933)
DNA (933bp) protein (311aa)
Allophanate hydrolase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z0S4_9BRAD
allophanate hydrolase
Allophanate hydrolase {ECO:0000313|EMBL:BAM86663.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_10_11_15_R1_B_scaffold_1418_2
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1188..1973
DNA (786bp) protein (262aa)
short-chain dehydrogenase/reductase SDR (EC:1.1.1.100)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000382CB2D
Uncharacterized protein {ECO:0000313|EMBL:KFN44110.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
SCN18_10_11_15_R1_B_scaffold_1418_3
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1989..3095
DNA (1107bp) protein (369aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUV3_9RHIZ
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EIM27745.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
FAD dependent oxidoreductase
SCN18_10_11_15_R1_B_scaffold_1418_4
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3107..3877)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI0003618470
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 {ECO:0000313|EMBL:CEJ10994.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short chain dehydrogenase family protein
SCN18_10_11_15_R1_B_scaffold_1418_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3966..4394)
DNA (429bp) protein (143aa)
peroxiredoxin n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000313019B
Peroxiredoxin {ECO:0000313|EMBL:EXS71634.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
osmC; osmotically inducible protein OsmC
SCN18_10_11_15_R1_B_scaffold_1418_6
unknown

Not on your lists

comp(4482..4796)
DNA (315bp) protein (105aa)

This feature has no annotations

SCN18_10_11_15_R1_B_scaffold_1418_7
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4997..6787
DNA (1791bp) protein (597aa)
Heme peroxidase family protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I1N2_9BRAD
Heme peroxidase family protein {ECO:0000313|EMBL:EJN12228.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
SCN18_10_11_15_R1_B_scaffold_1418_8
unknown

Not on your lists

6824..7240
DNA (417bp) protein (139aa)

This feature has no annotations

SCN18_10_11_15_R1_B_scaffold_1418_9
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7265..9394)
DNA (2130bp) protein (710aa)
DNA-binding transcriptional activator of the SARP family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WHY0_9BRAD
DNA-binding transcriptional activator of the SARP family {ECO:0000313|EMBL:EJN12230.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
trifolitoxin synthesis, TfuA
SCN18_10_11_15_R1_B_scaffold_1418_10
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9509..10759)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I1C3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN12231.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_1418_11
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10781..11272)
DNA (492bp) protein (164aa)
Putative nucleoside 2-deoxyribosyltransferase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HVX1_AZOC5
nucleoside 2-deoxyribosyltransferase
Putative nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:BAF90366.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_10_11_15_R1_B_scaffold_1418_12
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11386..11826
DNA (441bp) protein (147aa)
PREDICTED: nudix hydrolase 16, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1149B
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ABS68675.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R1_B_scaffold_1418_13
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11815..12561)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037D4950
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB49673.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Displaying 13 items

View Taxonomy