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SCN18_10_11_15_R1_B_scaffold_3967

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_3967_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1119)
DNA (1119bp) protein (373aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
transcription termination factor Rho n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035F1A5F
rho; transcription termination factor Rho
SCN18_10_11_15_R1_B_scaffold_3967_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1416..1943)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035F7027
membrane protein
Membrane protein {ECO:0000313|EMBL:AHB47431.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_3967_3
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1940..2995)
DNA (1056bp) protein (352aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Uroporphyrinogen decarboxylase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBL8_9RHIZ
uroporphyrinogen decarboxylase
SCN18_10_11_15_R1_B_scaffold_3967_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3423..4274
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003626A60
Marine sediment metagenome DNA, contig: S01H1_L03992 {ECO:0000313|EMBL:GAF79138.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PEP synthetase regulatory protein
SCN18_10_11_15_R1_B_scaffold_3967_5
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4267..4932
DNA (666bp) protein (222aa)
Maf-like protein Hden_3273 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JWV8_HYPDA
Maf-like protein BN1229_1066 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
maf protein
SCN18_10_11_15_R1_B_scaffold_3967_6
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4932..5558
DNA (627bp) protein (209aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036B452D
SCN18_10_11_15_R1_B_scaffold_3967_7
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5512..5763
DNA (252bp) protein (84aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000255|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000255|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000255|HAMAP-Rule:MF_00222};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Shikimate dehydrogenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=AROE_AZOC5
quinate shikimate 5-dehydrogenase
SCN18_10_11_15_R1_B_scaffold_3967_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5763..6380
DNA (618bp) protein (206aa)
Dephospho-CoA kinase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9K9_9RHIZ
Marine sediment metagenome DNA, contig: S01H1_S01102 {ECO:0000313|EMBL:GAF95361.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
dephospho-CoA kinase
Displaying 8 items

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