ggKbase home page

SCN18_10_11_15_R1_B_scaffold_3055_3

Organism: SCN18_10_11_15_R1_B_Rhizobiales_65_8

near complete RP 43 / 55 MC: 4 BSCG 44 / 51 MC: 3 ASCG 10 / 38
Location: comp(740..1429)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036D01A9 similarity UNIREF
DB: UNIREF100
  • Identity: 33.2
  • Coverage: 217.0
  • Bit_score: 127
  • Evalue 1.20e-26
Pilus (Caulobacter type) biogenesis lipoprotein CpaD {ECO:0000313|EMBL:CPR18915.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 35.5
  • Coverage: 231.0
  • Bit_score: 132
  • Evalue 4.00e-28
Flp pilus assembly protein CpaD similarity KEGG
DB: KEGG
  • Identity: 34.5
  • Coverage: 223.0
  • Bit_score: 126
  • Evalue 7.60e-27

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Afipia_61_20 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 690
ATGGCCGGTGTTGCAGCGATGCTGGCGGCTGCAGCCAGCATCCTACTCGCGGCCTGCGATGAGCGGCCGCCGCGTCTGCCCGATTACGTCGCTGTTGCGTTGAACGATGTGGATGAGCGCCACCCGATCGGCTTCGTGGATCAGGGGCAAGTTCTGCACATCGACGTGCCGCCGCGTGCCCGCGGCCTCAGCCACAATCAGCTCGTCGACATGCAGCGCTTCGTCGTGCGCTACAAGGCGGAGGGCGTCGGGAAGTTGTCGGTCTCGGTCCCGCGGCACGCAGGTGCGGATGCTGAAGCTTCGCACGCGATCGCCGACCTCGGCCGCATTCTGCGTGATGCAGGCGTTGCGCCCGCGCAGGTCGTGCGGACGCGCCACAGCGACGCCCAGCGTTCGCGCTCGACCTTACGCCTGAGTTACGCCCGGCCGCAGGCGCTCGCGCCGGTATGCGGCCACTGGCAGCAGGATGTCGGGAGGGATCCCGAGCGCCTGCACTATCCCCAGTTCGGCTGCGCGACGCAGCGCAATCTGGCCGGCATGGTCGCCAATGCTCGCGATCTCCAGCGGCCGCAGGACGAGCAGCCGCGCTCGGCTGAGCGGCGCTCGCAGACCTGGAGCAAGTACATCGCGCCAGATAACGGCGACGCCGCCGAGGCCAAGGCCAAAGCAGTCGACACAACGCGGAAGTAG
PROTEIN sequence
Length: 230
MAGVAAMLAAAASILLAACDERPPRLPDYVAVALNDVDERHPIGFVDQGQVLHIDVPPRARGLSHNQLVDMQRFVVRYKAEGVGKLSVSVPRHAGADAEASHAIADLGRILRDAGVAPAQVVRTRHSDAQRSRSTLRLSYARPQALAPVCGHWQQDVGRDPERLHYPQFGCATQRNLAGMVANARDLQRPQDEQPRSAERRSQTWSKYIAPDNGDAAEAKAKAVDTTRK*