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SCN18_26_2_15_R1_B_scaffold_6108

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R1_B_scaffold_6108_1
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..469
DNA (468bp) protein (156aa)
UPI0003CDFC67 related cluster n=1 Tax=unknown RepID=UPI0003CDFC67
ABC transporter permease {ECO:0000313|EMBL:ESY85567.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
ABC transporter permease
SCN18_26_2_15_R1_B_scaffold_6108_2
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(513..1895)
DNA (1383bp) protein (461aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
UPI0003CE537B related cluster n=1 Tax=unknown RepID=UPI0003CE537B
two-component sensor histidine kinase
SCN18_26_2_15_R1_B_scaffold_6108_3
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1882..2565)
DNA (684bp) protein (228aa)
PREDICTED: probable transcriptional regulator ycf27-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C134C0
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEH89593.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCN18_26_2_15_R1_B_scaffold_6108_4
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3026..3718
DNA (693bp) protein (231aa)
SOUL domain heme-binding protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H089_CAUCN
SOUL domain heme-binding protein
Uncharacterized protein {ECO:0000313|EMBL:AAK24520.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCN18_26_2_15_R1_B_scaffold_6108_5
unknown

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comp(4271..4858)
DNA (588bp) protein (196aa)

This feature has no annotations

SCN18_26_2_15_R1_B_scaffold_6108_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4902..5177)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SJS9_RHOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG08244.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
SCN18_26_2_15_R1_B_scaffold_6108_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5174..6391)
DNA (1218bp) protein (406aa)
conjugal transfer protein TraI n=1 Tax=Xanthobacteraceae RepID=UPI00036EAB5B
Conjugation TrbI family protein
Conjugation TrbI family protein {ECO:0000313|EMBL:CCG08243.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
SCN18_26_2_15_R1_B_scaffold_6108_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6388..7464)
DNA (1077bp) protein (359aa)
conjugative transfer protein TrbG n=1 Tax=Xanthobacteraceae RepID=UPI0003787C88
P-type conjugative transfer protein TrbG
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:CCG08242.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
SCN18_26_2_15_R1_B_scaffold_6108_9
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

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comp(7461..8150)
DNA (690bp) protein (230aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GLT1_9SPHN
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EQB01652.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
Conjugal transfer protein
SCN18_26_2_15_R1_B_scaffold_6108_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8153..9505)
DNA (1353bp) protein (451aa)
Type IV secretory pathway TrbL component n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z2J5_SPHJU
trbL; type IV secretory pathway TrbL component
Type IV secretory pathway TrbL component {ECO:0000313|EMBL:BAI96827.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCN18_26_2_15_R1_B_scaffold_6108_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9507..9896)
DNA (390bp) protein (130aa)
Entry exclusion protein TrbK n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z2J6_SPHJU
trbK; entry exclusion protein TrbK
Entry exclusion protein TrbK {ECO:0000313|EMBL:BAI96828.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCN18_26_2_15_R1_B_scaffold_6108_12
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

comp(9905..10666)
DNA (762bp) protein (254aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GFY7_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EQA99581.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
Conjugal transfer protein
SCN18_26_2_15_R1_B_scaffold_6108_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10663..11319)
DNA (657bp) protein (219aa)
Conjugal transfer protein TrbE n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GHS2_9SPHN
Type IV secretion system protein virB4 {ECO:0000313|EMBL:CEJ16023.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
conjugal transfer ATPase TrbE
Displaying 13 items

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