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SCN18_26_2_15_R2_B_scaffold_3032

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R2_B_scaffold_3032_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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2..487
DNA (486bp) protein (162aa)
ribonuclease (EC:3.1.4.-)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Ribonuclease E n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCP7_HYPSM
SCN18_26_2_15_R2_B_scaffold_3032_2
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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739..2148
DNA (1410bp) protein (470aa)
Peptidase M48 Ste24p n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCP8_HYPSM
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:CCB66413.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3032_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2184..3035
DNA (852bp) protein (284aa)
DSBA oxidoreductase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCP9_HYPSM
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:CCB66414.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3032_4
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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3201..3656
DNA (456bp) protein (152aa)
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
3-dehydroquinate dehydratase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCQ0_HYPSM
SCN18_26_2_15_R2_B_scaffold_3032_5
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3717..4208
DNA (492bp) protein (164aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCQ1_HYPSM
accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit
Acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit {ECO:0000313|EMBL:CCB66416.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3032_6
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4249..5589
DNA (1341bp) protein (447aa)
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14)
Acetyl CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:CCB66417.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CCB66417.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Acetyl CoA carboxylase, biotin carboxylase subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCQ2_HYPSM
SCN18_26_2_15_R2_B_scaffold_3032_7
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5650..6327
DNA (678bp) protein (226aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4Q9_9RHIZ
leucyl/phenylalanyl-tRNA/protein transferase
SCN18_26_2_15_R2_B_scaffold_3032_8
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6365..6991
DNA (627bp) protein (209aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
3-methyladenine DNA glycosylase n=1 Tax=Methyloferula stellata RepID=UPI00036D83A4
DNA-3-methyladenine glycosylase
SCN18_26_2_15_R2_B_scaffold_3032_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7027..8244)
DNA (1218bp) protein (406aa)
Cellulose synthesis regulatory protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JIE5_OLICO
diguanylate cyclase
GGDEF domain protein {ECO:0000313|EMBL:AEI05735.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_26_2_15_R2_B_scaffold_3032_10
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8529..10076)
DNA (1548bp) protein (516aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCR1_HYPSM
SCN18_26_2_15_R2_B_scaffold_3032_11
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10209..10658)
DNA (450bp) protein (150aa)
Protein CrtK n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCR3_HYPSM
crtK; protein CrtK
Protein CrtK {ECO:0000313|EMBL:CCB66428.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3032_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10753..12765)
DNA (2013bp) protein (671aa)
Acyltransferase 3 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IE02_9SPHN
acyltransferase 3
Acyltransferase 3 {ECO:0000313|EMBL:CCA90527.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCN18_26_2_15_R2_B_scaffold_3032_13
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12925..13320
DNA (396bp) protein (132aa)
Nuclear protein SET n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAF8_9RHIZ
nuclear protein SET
Nuclear protein SET {ECO:0000313|EMBL:AGK57100.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_26_2_15_R2_B_scaffold_3032_14
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

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comp(13336..13920)
DNA (585bp) protein (195aa)
Nuclear protein SET n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCR5_HYPSM
Nuclear protein SET
Nuclear protein SET {ECO:0000313|EMBL:CCB66430.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3032_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14223..15512)
DNA (1290bp) protein (430aa)
Putative SUN-family protein, RNA methyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCR6_HYPSM
SUN-family protein, RNA methyltransferase
Putative SUN-family protein, RNA methyltransferase {ECO:0000313|EMBL:CCB66431.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_3032_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15551..15973)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JTT1_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ22643.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_26_2_15_R2_B_scaffold_3032_17
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16024..16248)
DNA (225bp) protein (75aa)
guaB; inosine monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCR8_HYPSM
Displaying 17 items

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