ggKbase home page

SCN18_30_10_14_R2_B_scaffold_10099

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_10099_1
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51..2036)
DNA (1986bp) protein (662aa)
hypothetical protein n=1 Tax=Loktanella vestfoldensis RepID=UPI0003645140
acyltransferase 3
Tax=BJP_08E140C01_Syntrophobacterales_43_19
SCN18_30_10_14_R2_B_scaffold_10099_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2420..2605)
DNA (186bp) protein (62aa)
Hydroxyquinol 1,2-dioxygenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V0H8_9RHIZ
Hydroxyquinol 1,2-dioxygenase {ECO:0000313|EMBL:ENN84617.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
dioxygenase subfamily protein
SCN18_30_10_14_R2_B_scaffold_10099_3
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2722..3135
DNA (414bp) protein (138aa)
UPI0003CDD3A8 related cluster n=1 Tax=unknown RepID=UPI0003CDD3A8
Uncharacterized protein {ECO:0000313|EMBL:ESW77263.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCN18_30_10_14_R2_B_scaffold_10099_4
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3132..3848)
DNA (717bp) protein (239aa)
Putative sulfotransferase protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BPR2_9GAMM
hypothetical protein
Putative sulfotransferase protein {ECO:0000313|EMBL:EAR22067.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
SCN18_30_10_14_R2_B_scaffold_10099_5
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4092..4859
DNA (768bp) protein (256aa)
UPI0003CE0A10 related cluster n=1 Tax=unknown RepID=UPI0003CE0A10
Stf0 sulfotransferase {ECO:0000313|EMBL:ESY92524.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_10099_6
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4985..6142)
DNA (1158bp) protein (386aa)
acetyl-CoA synthetase (EC:6.2.1.13)
Putative acetyl-CoA synthetase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QQD0_BORBO
ATP-grasp domain protein {ECO:0000313|EMBL:KCV63942.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCN18_30_10_14_R2_B_scaffold_10099_7
unknown

Not on your lists

6340..6681
DNA (342bp) protein (114aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_10099_8
unknown

Not on your lists

6700..6951
DNA (252bp) protein (84aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_10099_9
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7144..8298)
DNA (1155bp) protein (385aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
acyl-CoA dehydrogenase n=1 Tax=Brevibacillus brevis RepID=UPI000367451B
Tax=RBG_13_Chloroflexi_50_10_curated
SCN18_30_10_14_R2_B_scaffold_10099_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8310..9089)
DNA (780bp) protein (260aa)
Probable enoyl-CoA hydratase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QNX3_BORBO
enoyl-CoA hydratase
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:KCV63958.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCN18_30_10_14_R2_B_scaffold_10099_11
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9161..9940)
DNA (780bp) protein (260aa)
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AIS16244.1}; TaxID=216142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas rhizosphaerae.;"
ABC superfamily ATP binding cassette transporter, membrane protein id=3638051 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SCN18_30_10_14_R2_B_scaffold_10099_12
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9937..10407)
DNA (471bp) protein (157aa)
ABC transporter permease n=1 Tax=Brevibacillus laterosporus RepID=UPI00037D869B
ABC transporter permease {ECO:0000313|EMBL:KFE48929.1}; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;"
binding-protein-dependent transport systems inner membrane component
Displaying 12 items

View Taxonomy