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SCNpilot_cont_300_bf_scaffold_560

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_560_1
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89..745
DNA (657bp) protein (219aa)
resolvase n=1 Tax=Sphingomonas melonis RepID=UPI0003804E5E rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP54334.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
parA; resolvase protein
SCNpilot_cont_300_bf_scaffold_560_2
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(853..2427)
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003747A2A rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB17963.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
SCNpilot_cont_300_bf_scaffold_560_3
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2569..3024
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035C7C76
Uncharacterized protein {ECO:0000313|EMBL:ETI64677.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
SCNpilot_cont_300_bf_scaffold_560_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3203..3625)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003762B6B
MarR family transcriptional regulator {ECO:0000313|EMBL:KHA64300.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="S
MarR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_560_5
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3735..5162)
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036096F6 rbh
RND transporter {ECO:0000313|EMBL:KFD28054.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (S
RND transporter
SCNpilot_cont_300_bf_scaffold_560_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5162..6688)
DNA (1527bp) protein (509aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036DA7F1
DSBA oxidoreductase {ECO:0000313|EMBL:KFD28053.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuya
DSBA oxidoreductase
SCNpilot_cont_300_bf_scaffold_560_7
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6688..7956)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003676F83
Multidrug ABC transporter permease {ECO:0000313|EMBL:KFD28052.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphing
multidrug ABC transporter permease
SCNpilot_cont_300_bf_scaffold_560_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8068..8319
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KFD28051.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoi
SCNpilot_cont_300_bf_scaffold_560_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8316..8924
DNA (609bp) protein (203aa)
MltA-interacting MipA n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9K9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFD28051.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoi
structural protein MipA
SCNpilot_cont_300_bf_scaffold_560_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8921..9148)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GFG3_9SPHN
Putative efflux system protein {ECO:0000313|EMBL:GAO38743.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
RND transporter
SCNpilot_cont_300_bf_scaffold_560_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9145..10143)
DNA (999bp) protein (333aa)
RND transporter n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028A2D82 rbh
Putative efflux system protein {ECO:0000313|EMBL:GAO38743.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
RND transporter
SCNpilot_cont_300_bf_scaffold_560_12
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10370..11194)
DNA (825bp) protein (275aa)
DSBA oxidoreductase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002894983
Putative multidrug efflux pump membrane protein EmrB {ECO:0000313|EMBL:GAO38744.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomo
EmrB/QacA family drug resistance transporter
SCNpilot_cont_300_bf_scaffold_560_13
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11195..11893)
DNA (699bp) protein (233aa)
DSBA oxidoreductase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000379A7FD
Putative multidrug efflux pump membrane protein EmrB {ECO:0000313|EMBL:GAO38744.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomo
drug resistance MFS transporter, drug:H+ antiporter-2 family protein
SCNpilot_cont_300_bf_scaffold_560_14
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11890..12579)
DNA (690bp) protein (230aa)
secretion protein HlyD n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000365C3E0 rbh
Putative multidrug efflux pump membrane fusion protein EmrA {ECO:0000313|EMBL:GAO38745.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sp
secretion protein HlyD family protein
SCNpilot_cont_300_bf_scaffold_560_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12563..12949)
DNA (387bp) protein (129aa)
secretion protein HlyD n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000287E59A
Putative multidrug efflux pump membrane fusion protein EmrA {ECO:0000313|EMBL:GAO38745.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sp
secretion protein HlyD
SCNpilot_cont_300_bf_scaffold_560_16
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13484..15286)
DNA (1803bp) protein (601aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI0003652AAF rbh
Uncharacterized protein {ECO:0000313|EMBL:ELB90919.1}; TaxID=1195242 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis IFP 2016.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_560_17
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15283..16482)
DNA (1200bp) protein (400aa)
formyl-CoA transferase (EC:2.8.3.16) rbh
Probable formyl-CoA transferase {ECO:0000313|EMBL:ABG92598.1}; EC=2.8.3.16 {ECO:0000313|EMBL:ABG92598.1};; TaxID=101510 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI000374FC77 rbh
SCNpilot_cont_300_bf_scaffold_560_18
Sphingopyxis macrogoltabida, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16496..19381)
DNA (2886bp) protein (962aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B49773 rbh
FumJ {ECO:0000313|EMBL:ACS27062.1}; TaxID=33050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis macrogoltabida (Sphing
hypothetical protein
SCNpilot_cont_300_bf_scaffold_560_19
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19424..20755)
DNA (1332bp) protein (444aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VFJ2_CAUST
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG09724.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulob
SCNpilot_cont_300_bf_scaffold_560_20
Rhodococcus sp. JVH1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20884..21393
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhodococcus sp. JVH1 RepID=J2JLP4_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:EJJ01248.1}; TaxID=745408 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. JVH1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_560_21
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21393..21794
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodococcus sp. (strain RHA1) RepID=Q0SIP0_RHOSR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG92596.1}; TaxID=101510 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (strain RHA1).;"
SCNpilot_cont_300_bf_scaffold_560_22
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22135..23298
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI00036328B1 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETX04743.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
putative acyl-CoA dehydrogenase YngJ
SCNpilot_cont_300_bf_scaffold_560_23
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23419..24156
DNA (738bp) protein (246aa)
IclR family transcriptional regulator n=1 Tax=Ponticaulis koreensis RepID=UPI0003B66459
Uncharacterized protein {ECO:0000313|EMBL:KCZ58709.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchie
IclR-family regulatory protein
SCNpilot_cont_300_bf_scaffold_560_24
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24744..25346)
DNA (603bp) protein (201aa)
Plasmid pRiA4b ORF-3-like family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTD8_9SPHN rbh
Plasmid pRiA4b ORF-3-like family protein {ECO:0000313|EMBL:KEQ54985.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="
plasmid pRiA4b ORF-3 family protein
SCNpilot_cont_300_bf_scaffold_560_25
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25343..26887)
DNA (1545bp) protein (515aa)
Transposase IS66 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3P3_9SPHN rbh
Transposase {ECO:0000313|EMBL:AKH18889.1}; Transposase IS66 {ECO:0000313|EMBL:AHE54143.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sp
transposase rbh
SCNpilot_cont_300_bf_scaffold_560_26
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26949..27296)
DNA (348bp) protein (116aa)
isocitrate lyase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B419BA
IS66 Orf2 like family protein {ECO:0000313|EMBL:KEQ54991.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium
isocitrate lyase
SCNpilot_cont_300_bf_scaffold_560_27
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27293..27667)
DNA (375bp) protein (125aa)
Transposase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3P1_9SPHN
Transposase family protein {ECO:0000313|EMBL:KEQ54992.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ch
hypothetical protein
SCNpilot_cont_300_bf_scaffold_560_28
unknown

Not on your lists

27680..27796
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_560_29
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27799..27897)
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J2I5_9SPHN
Transposase {ECO:0000313|EMBL:EQB30275.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3
SCNpilot_cont_300_bf_scaffold_560_30
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28172..28567
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003640DE5
TonB-dependent receptor {ECO:0000313|EMBL:KHS49096.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
TonB-dependent receptor
Displaying items 1-30 of 39 in total

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