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scnpilot_expt_750_p_scaffold_614_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_614_curated_1
Paraglaciecola arctica, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..8711)
DNA (8709bp) protein (2903aa)
Conserved repeat domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWA0_BREDI
Serine-aspartate repeat-containing protein C/D/E {ECO:0000313|EMBL:GAC19124.1}; TaxID=493475 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola arctica BSs20135.;"
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_2
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9351..13559)
DNA (4209bp) protein (1403aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002FC4053
hypothetical protein
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_3
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13556..21358)
DNA (7803bp) protein (2601aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002FE3DE0
Uncharacterized protein {ECO:0000313|EMBL:EJL78312.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_4
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21770..22489)
DNA (720bp) protein (240aa)
Response regulator 4 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FAB5_9BURK
response regulator 4
response regulator 4
response regulator 4
scnpilot_expt_750_p_scaffold_614_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22655..24823
DNA (2169bp) protein (723aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Two component transcriptional regulator, sensor histidine kinase n=1 Tax=Variovorax paradoxus B4 RepID=T1XGY3_VARPD
two component transcriptional regulator, sensor histidine kinase
two component transcriptional regulator, sensor histidine kinase
scnpilot_expt_750_p_scaffold_614_curated_6
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24938..26347)
DNA (1410bp) protein (470aa)
FAD-linked oxidase n=1 Tax=Cupriavidus sp. WS RepID=UPI00037B352A
FAD-linked oxidase {ECO:0000313|EMBL:KDP89184.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
fad oxidoreductase
fad oxidoreductase
scnpilot_expt_750_p_scaffold_614_curated_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26496..27530)
DNA (1035bp) protein (345aa)
4-hydroxy-2-oxovalerate aldolase 3 {ECO:0000255|HAMAP-Rule:MF_01656}; Short=HOA 3 {ECO:0000255|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000255|HAMAP-Rule:MF_01656};; 4-hydroxy-2-keto-pentanoic acid aldolase 3 {ECO:0000255|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase 3 {ECO:0000255|HAMAP-Rule:MF_01656}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
pyruvate carboxyltransferase; K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
pyruvate carboxyltransferase; K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
pyruvate carboxyltransferase; K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
scnpilot_expt_750_p_scaffold_614_curated_8
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27541..28449)
DNA (909bp) protein (303aa)
nahO; acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
nahO; acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
nahO; acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
nahO; acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
scnpilot_expt_750_p_scaffold_614_curated_9
Pseudomonas frederiksbergensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28474..29871)
DNA (1398bp) protein (466aa)
transporter n=1 Tax=Pseudomonas putida RepID=UPI0003065380
Transporter {ECO:0000313|EMBL:KHK61780.1}; TaxID=104087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas frederiksbergensis.;"
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_10
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30182..31810
DNA (1629bp) protein (543aa)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Thauera aminoaromatica S2 RepID=N6YBL6_9RHOO
PAS/PAC sensor signal transduction histidine kinase
PAS/PAC sensor signal transduction histidine kinase
PAS/PAC sensor signal transduction histidine kinase
scnpilot_expt_750_p_scaffold_614_curated_11
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31807..32430
DNA (624bp) protein (208aa)
Two-component response regulator n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P919_AROAE
two-component response regulator
two-component response regulator
two-component response regulator
scnpilot_expt_750_p_scaffold_614_curated_12
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33334..34173)
DNA (840bp) protein (280aa)
Uncharacterized protein n=17 Tax=Acinetobacter baumannii RepID=B0V6K3_ACIBY
hypothetical protein
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_13
Halomonas sp. BC04, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34978..37224
DNA (2247bp) protein (749aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) RepID=F8H5P0_PSEUT
Uncharacterized protein {ECO:0000313|EMBL:EWH01912.1}; TaxID=1403540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. BC04.;"
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_14
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37307..37516
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6Y3R3_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO74699.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
scnpilot_expt_750_p_scaffold_614_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37525..38418)
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZNE2_THASP
LysR family transcriptional regulator
LysR family transcriptional regulator
LysR family transcriptional regulator
scnpilot_expt_750_p_scaffold_614_curated_16
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39016..40386)
DNA (1371bp) protein (457aa)
Outer membrane efflux protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T3S1_JANMA
outer membrane efflux protein
outer membrane efflux protein
outer membrane efflux protein
scnpilot_expt_750_p_scaffold_614_curated_17
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40383..42344)
DNA (1962bp) protein (654aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
phosphonate-transporting ATPase (EC:3.6.3.28)
phosphonate-transporting ATPase (EC:3.6.3.28)
phosphonate-transporting ATPase (EC:3.6.3.28)
scnpilot_expt_750_p_scaffold_614_curated_18
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42341..43519)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI000368EC94
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:ENO88781.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
macrolide-specific efflux protein macA; K13888 macrolide-specific efflux protein MacA
macrolide-specific efflux protein macA; K13888 macrolide-specific efflux protein MacA
scnpilot_expt_750_p_scaffold_614_curated_19
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43614..43931)
DNA (318bp) protein (106aa)
Membrane protein n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F6P8_9BURK
Membrane protein {ECO:0000313|EMBL:EZP46295.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_20
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43928..44230)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KJN3_9BURK
Strain MEJ086 contig_79, whole genome shotgun sequence {ECO:0000313|EMBL:KIP93879.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_21
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44227..45819)
DNA (1593bp) protein (531aa)
Putative iron-regulated membrane protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EGG4_9BURK
Putative iron-regulated membrane protein {ECO:0000313|EMBL:EJE51401.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
PepSY-associated TM helix domain protein precursor
PepSY-associated TM helix domain protein precursor
scnpilot_expt_750_p_scaffold_614_curated_22
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45875..48379)
DNA (2505bp) protein (835aa)
TonB-dependent siderophore receptor n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XBW9_METSD
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
scnpilot_expt_750_p_scaffold_614_curated_23
unknown

Not on your lists

comp(48425..48637)
DNA (213bp) protein (71aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_614_curated_24
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48858..49196
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2GYR8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AJD48548.1}; TaxID=391936 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax pacificus W11-5.;"
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_614_curated_25
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49147..49668
DNA (522bp) protein (174aa)
scnpilot_expt_750_p_scaffold_614_curated_26
unknown

Not on your lists

comp(49684..49914)
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_614_curated_27
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49936..50988)
DNA (1053bp) protein (351aa)
Appr-1-p processing domain-containing protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EDH8_9BURK
Appr-1-p processing protein {ECO:0000313|EMBL:EZQ20227.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Appr-1-p processing enzyme rbh
Appr-1-p processing enzyme rbh
scnpilot_expt_750_p_scaffold_614_curated_28
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51081..52076)
DNA (996bp) protein (332aa)
Anti-FecI sigma factor FecR n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y420_9RHOO
Anti-FecI sigma factor FecR {ECO:0000313|EMBL:ENO86340.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
anti-FecI sigma factor FecR; K07165 transmembrane sensor
scnpilot_expt_750_p_scaffold_614_curated_29
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52087..52602)
DNA (516bp) protein (172aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XX26_9RHOO
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:ENO86341.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_expt_750_p_scaffold_614_curated_30
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52828..53730
DNA (903bp) protein (301aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) RepID=F8H1W0_PSEUT
LysR family transcriptional regulator
LysR family transcriptional regulator
LysR family transcriptional regulator
Displaying items 1-30 of 46 in total

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