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scnpilot_expt_750_p_scaffold_1262_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_1262_curated_1
Acinetobacter venetianus, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(106..3060)
DNA (2955bp) protein (985aa)
Uncharacterized protein n=1 Tax=Acinetobacter venetianus RAG-1 = CIP 110063 RepID=N8YK01_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENV37117.1}; TaxID=1191460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. (strain ATCC 31012).;"
transposase, TnpA family
transposase, TnpA family
scnpilot_expt_750_p_scaffold_1262_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3156..6272)
DNA (3117bp) protein (1039aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003814170
heavy metal efflux pump, cobalt-zinc-cadmium
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG89163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
heavy metal efflux pump, cobalt-zinc-cadmium
scnpilot_expt_750_p_scaffold_1262_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6269..7309)
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036D4873
hypothetical protein
hypothetical protein
hypothetical protein
scnpilot_expt_750_p_scaffold_1262_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7306..8715)
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036F296B
outer membrane protein
outer membrane protein
outer membrane protein
scnpilot_expt_750_p_scaffold_1262_curated_5
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8873..10267)
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
heavy metal sensor signal transduction histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
heavy metal sensor signal transduction histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
heavy metal sensor signal transduction histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
scnpilot_expt_750_p_scaffold_1262_curated_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10272..10946)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037FA685
Transcriptional activator protein czcR {ECO:0000313|EMBL:CDQ12289.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
two component heavy metal response winged helix family transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
two component heavy metal response winged helix family transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
scnpilot_expt_750_p_scaffold_1262_curated_7
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10981..12117)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FD6C4
Integrase {ECO:0000313|EMBL:KHD33340.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
Phage integrase
Phage integrase
scnpilot_expt_750_p_scaffold_1262_curated_8
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12303..13331
DNA (1029bp) protein (343aa)
Plasmid replication region DNA-binding protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IBC5_9BURK
Plasmid replication region DNA-binding protein {ECO:0000313|EMBL:EIF28027.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
putative cointegrase resolution protein
putative cointegrase resolution protein
scnpilot_expt_750_p_scaffold_1262_curated_9
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13364..16336)
DNA (2973bp) protein (991aa)
Tn1696 transposase TnpA n=43 Tax=Proteobacteria RepID=C4NV11_ECOLX
transposase Tn21
Transposase {ECO:0000313|EMBL:AJE44700.1}; Transposase Tn3 family protein {ECO:0000313|EMBL:BAP75821.1}; TaxID=571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca.;"
transposase Tn21
scnpilot_expt_750_p_scaffold_1262_curated_10
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16339..16896)
DNA (558bp) protein (186aa)
DNA-invertase n=41 Tax=Proteobacteria RepID=C4NV12_ECOLX
Resolvase for Tn21
Resolvase for Tn21
Resolvase for Tn21
scnpilot_expt_750_p_scaffold_1262_curated_11
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17139..17474
DNA (336bp) protein (112aa)
Propeptide, PepSY amd peptidase M4 n=5 Tax=Bacteria RepID=A4JUZ6_BURVG
propeptide, PepSY amd peptidase M4
propeptide, PepSY amd peptidase M4
propeptide, PepSY amd peptidase M4
scnpilot_expt_750_p_scaffold_1262_curated_12
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17531..18127
DNA (597bp) protein (199aa)
mmfB; UDP pyrophosphate phosphatase (EC:3.6.1.27)
mmfB; UDP pyrophosphate phosphatase (EC:3.6.1.27)
mmfB; UDP pyrophosphate phosphatase (EC:3.6.1.27)
Phosphoesterase PA-phosphatase related n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7P4_ACIDE
scnpilot_expt_750_p_scaffold_1262_curated_13
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18197..18979
DNA (783bp) protein (261aa)
Uncharacterized protein n=7 Tax=Bacteria RepID=A4JUZ8_BURVG
mmfC1; permease MFS
mmfC1; permease MFS
mmfC1; permease MFS
scnpilot_expt_750_p_scaffold_1262_curated_14
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19009..19461
DNA (453bp) protein (151aa)
Conserved hypothetical signal peptide protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JUZ9_BURVG
putative signal peptide protein
putative signal peptide protein
putative signal peptide protein
scnpilot_expt_750_p_scaffold_1262_curated_15

Not on your lists

19478..20236
DNA (759bp) protein (253aa)
Uncharacterized protein n=4 Tax=Bacteria RepID=C5T7P7_ACIDE
mmfC2; major facilitator superfamily permease
mmfC2; major facilitator superfamily permease
mmfC2; major facilitator superfamily permease
scnpilot_expt_750_p_scaffold_1262_curated_16
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20259..20924
DNA (666bp) protein (222aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JV01_BURVG
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
scnpilot_expt_750_p_scaffold_1262_curated_17
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20900..22252
DNA (1353bp) protein (451aa)
integral membrane sensor signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
integral membrane sensor signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
integral membrane sensor signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;"
scnpilot_expt_750_p_scaffold_1262_curated_18
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22281..22712
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2FXP7_BURVI
Uncharacterized protein {ECO:0000313|EMBL:ERJ35465.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
hypothetical protein; K08978 putative membrane protein
hypothetical protein; K08978 putative membrane protein
scnpilot_expt_750_p_scaffold_1262_curated_19
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22779..23393)
DNA (615bp) protein (205aa)
Resolvase, N-terminal domain protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JV07_BURVG
resolvase domain-containing protein
resolvase domain-containing protein
resolvase domain-containing protein
Displaying 19 items

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