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SCNpilot_expt_1000_bf_scaffold_3116_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3116_curated_1
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2522)
DNA (2520bp) protein (840aa)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:AFU45882.1}; EC=1.2.4.2 {ECO:0000313|EMBL:AFU45882.1};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
sucA; 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)
2-oxoglutarate dehydrogenase E1 component n=1 Tax=Acidovorax sp. KKS102 RepID=K0HY79_9BURK
SCNpilot_expt_1000_bf_scaffold_3116_curated_2
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2766..3845
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9U8_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45881.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3875..3979)
DNA (105bp) protein (35aa)
transposase n=1 Tax=Perlucidibaca piscinae RepID=UPI0003B7075F
Transposase {ECO:0000313|EMBL:CAO91762.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_4
Acinetobacter sp. NIPH 1859, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5086..5448
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. NIPH 1859 RepID=N9QVR8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENX34126.1}; TaxID=1217695 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. NIPH 1859.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3116_curated_5
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5513..6013)
DNA (501bp) protein (167aa)
Transcriptional regulator, AraC family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13JG3_BURXL
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABE35776.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_6
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6079..6330)
DNA (252bp) protein (84aa)
Transcriptional regulator, AraC family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13JG3_BURXL
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABE35776.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_7
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6356..6619)
DNA (264bp) protein (88aa)
Transcriptional regulator, GntR family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WQ61_VEREI
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABM59768.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_8
unknown

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comp(8737..8886)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3116_curated_9
Pseudomonas sp. GM21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9246..10850
DNA (1605bp) protein (535aa)
pyruvate/ketoisovalerate oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit n=1 Tax=Pseudomonas sp. GM21 RepID=J2WB00_9PSED
Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit {ECO:0000313|EMBL:EJM13183.1}; TaxID=1144325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM21.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_10
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10891..11037)
DNA (147bp) protein (49aa)
aminoglycoside phosphotransferase (EC:2.7.1.95); K06979
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:AEI76608.1}; EC=2.7.1.95 {ECO:0000313|EMBL:AEI76608.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Aminoglycoside phosphotransferase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0ERH1_CUPNN
SCNpilot_expt_1000_bf_scaffold_3116_curated_11
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12537..13268
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Neisseria sp. oral taxon 020 str. F0370 RepID=L1NPA9_9NEIS
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_1000_bf_scaffold_3116_curated_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13254..14045)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9S6_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45846.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14045..14587)
DNA (543bp) protein (181aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0Q9_9BURK
peptidoglycan-associated lipoprotein
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:AFU45845.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14632..15951)
DNA (1320bp) protein (440aa)
Protein TolB n=1 Tax=Acidovorax sp. KKS102 RepID=K0I3T0_9BURK
tolB; translocation protein TolB
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_15
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16092..17894
DNA (1803bp) protein (601aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000256|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01703};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA n=1 Tax=Acidovorax sp. KKS102 RepID=K0HS79_9BURK
lipid A ABC transporter ATPase/inner membrane protein MsbA
SCNpilot_expt_1000_bf_scaffold_3116_curated_16
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18003..18677)
DNA (675bp) protein (225aa)
Ankyrin n=1 Tax=Acidovorax sp. KKS102 RepID=K0HY44_9BURK
ankyrin
Ankyrin {ECO:0000313|EMBL:AFU45842.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_17
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18674..19480)
DNA (807bp) protein (269aa)
TatD family hydrolase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9S2_9BURK
TatD family hydrolase
TatD family hydrolase {ECO:0000313|EMBL:AFU45841.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_18
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19631..19990)
DNA (360bp) protein (120aa)
Type IV pilus assembly pilz n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0Q5_9BURK
type IV pilus assembly pilz
Type IV pilus assembly pilz {ECO:0000313|EMBL:AFU45840.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_19
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20006..21013)
DNA (1008bp) protein (336aa)
DNA-directed DNA polymerase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I3S6_9BURK
DNA-directed DNA polymerase
DNA-directed DNA polymerase {ECO:0000313|EMBL:AFU45839.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_3116_curated_20
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21010..21687)
DNA (678bp) protein (226aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Thymidylate kinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HS74_9BURK
thymidylate kinase
Displaying 20 items

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