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SCNpilot_expt_1000_bf_scaffold_2769_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2769_curated_1
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..306)
DNA (306bp) protein (102aa)
NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH dehydrogenase subunit G {ECO:0000313|EMBL:AFU45240.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AFU45240.1};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
NADH dehydrogenase subunit G n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZI6_9BURK
SCNpilot_expt_1000_bf_scaffold_2769_curated_2
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1306..1443
DNA (138bp) protein (46aa)
id=12553902 bin=BDI tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EWS65684.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1559..2638)
DNA (1080bp) protein (360aa)
NADH-quinone oxidoreductase subunit F n=1 Tax=Acidovorax sp. KKS102 RepID=K0I208_9BURK
NADH-quinone oxidoreductase subunit F
NADH-quinone oxidoreductase subunit F {ECO:0000313|EMBL:AFU45239.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2921..3409)
DNA (489bp) protein (163aa)
NADH-quinone oxidoreductase subunit E n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQC7_9BURK
NADH-quinone oxidoreductase subunit E
NADH-quinone oxidoreductase subunit E {ECO:0000313|EMBL:AFU45238.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_5
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3406..4659)
DNA (1254bp) protein (418aa)
NADH dehydrogenase subunit D (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
NADH-quinone oxidoreductase subunit D n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWH0_9BURK
SCNpilot_expt_1000_bf_scaffold_2769_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4687..5295)
DNA (609bp) protein (203aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
NADH-quinone oxidoreductase subunit C n=1 Tax=Acidovorax sp. KKS102 RepID=K0I8A0_9BURK
NADH (or F420H2) dehydrogenase subunit C
SCNpilot_expt_1000_bf_scaffold_2769_curated_7
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5306..5785)
DNA (480bp) protein (160aa)
NADH dehydrogenase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=K0HZI1_9BURK
SCNpilot_expt_1000_bf_scaffold_2769_curated_8
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5810..6169)
DNA (360bp) protein (120aa)
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Acidovorax radicis RepID=UPI000237710A
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_2769_curated_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6443..6808)
DNA (366bp) protein (122aa)
Preprotein translocase subunit SecG n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQC4_9BURK
secG; preprotein translocase subunit SecG
Preprotein translocase subunit SecG {ECO:0000313|EMBL:AFU45233.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_10
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6851..7600)
DNA (750bp) protein (250aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Triosephosphate isomerase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWG6_9BURK
SCNpilot_expt_1000_bf_scaffold_2769_curated_11
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7603..8388)
DNA (786bp) protein (262aa)
NAD(P)H quinone oxidoreductase, PIG3 family protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I896_9BURK
NAD(P)H quinone oxidoreductase, PIG3 family protein
NAD(P)H quinone oxidoreductase, PIG3 family protein {ECO:0000313|EMBL:AFU45231.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8689..10932)
DNA (2244bp) protein (748aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZH5_9BURK
polynucleotide phosphorylase/polyadenylase
SCNpilot_expt_1000_bf_scaffold_2769_curated_13
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11140..11406)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=4 Tax=Comamonadaceae RepID=RS15_VEREI
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_1000_bf_scaffold_2769_curated_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11763..12065
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQB9_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45228.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_15
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12157..12633)
DNA (477bp) protein (159aa)
Molybdopterin biosynthesis MoaE protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWG2_9BURK
molybdopterin biosynthesis protein MoaE
Molybdopterin biosynthesis MoaE protein {ECO:0000313|EMBL:AFU45227.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_16
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12683..12913)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I892_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45226.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_17
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13001..13255
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZH2_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45225.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_18
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13260..13619
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1Z6_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45224.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_19
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13633..13758
DNA (126bp) protein (42aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1W7_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL21292.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_20
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13889..14776
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQB5_9BURK
dihydrodipicolinate synthetase
SCNpilot_expt_1000_bf_scaffold_2769_curated_21
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14763..15014)
DNA (252bp) protein (84aa)
Molybdopterin converting factor subunit 1 n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWF8_9BURK
molybdopterin converting factor subunit 1
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_22
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15011..16264)
DNA (1254bp) protein (418aa)
Molybdenum cofactor synthesis domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I888_9BURK
molybdenum cofactor synthesis domain-containing protein
Molybdenum cofactor synthesis domain-containing protein {ECO:0000313|EMBL:AFU45221.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_23
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16249..16818)
DNA (570bp) protein (190aa)
Molybdopterin-guanine dinucleotide biosynthesis protein B n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZG6_9BURK
molybdopterin-guanine dinucleotide biosynthesis protein MobB
Molybdopterin-guanine dinucleotide biosynthesis protein B {ECO:0000313|EMBL:AFU45220.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_24
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16978..18408)
DNA (1431bp) protein (477aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase {ECO:0000313|EMBL:AFU45219.1}; EC=4.2.3.1 {ECO:0000313|EMBL:AFU45219.1};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Threonine synthase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1Z3_9BURK
SCNpilot_expt_1000_bf_scaffold_2769_curated_25
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18760..18948)
DNA (189bp) protein (63aa)
homoserine dehydrogenase (EC:1.1.1.3)
homoserine dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI0002376D99
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_1000_bf_scaffold_2769_curated_26
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19600..19824
DNA (225bp) protein (75aa)
Tax=RBG_16_Gallionellales_57_15_curated
SCNpilot_expt_1000_bf_scaffold_2769_curated_27
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20142..21170)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I885_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45216.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2769_curated_28
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21208..22455)
DNA (1248bp) protein (416aa)
aminotransferase AlaT (EC:2.6.1.2)
Aminotransferase AlaT {ECO:0000313|EMBL:AFU45215.1}; EC=2.6.1.2 {ECO:0000313|EMBL:AFU45215.1};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Aminotransferase AlaT n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZG4_9BURK
SCNpilot_expt_1000_bf_scaffold_2769_curated_29
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22604..22975
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1Y8_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45214.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Displaying 29 items

View Taxonomy