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SCNpilot_expt_1000_bf_scaffold_23545_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_23545_curated_1
unknown

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1..99
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_23545_curated_2
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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335..805
DNA (471bp) protein (157aa)
PTS system, enzyme IIA Ntr; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
Candidate PTS system, enzyme IIA Ntr n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y410_RAMTT
Candidate PTS system, enzyme IIA Ntr {ECO:0000313|EMBL:AEG91288.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_23545_curated_3
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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858..2012
DNA (1155bp) protein (385aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
HPr kinase/phosphorylase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
HPr kinase/phosphorylase n=1 Tax=Polaromonas sp. CF318 RepID=J3CXF6_9BURK
SCNpilot_expt_1000_bf_scaffold_23545_curated_4
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1918..2208)
DNA (291bp) protein (97aa)
Candidate transcriptional regulator Fur (Ferric uptake regulation protein), Fur family n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y412_RAMTT
fur; transcriptional regulator Fur; K03711 Fur family transcriptional regulator, ferric uptake regulator
Candidate transcriptional regulator Fur (Ferric uptake regulation protein), Fur family {ECO:0000313|EMBL:AEG91290.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_23545_curated_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2517..3014
DNA (498bp) protein (166aa)
SmpA/OmlA domain-containing protein; K06186 small protein A id=12550777 bin=BDI species=Acidovorax citrulli genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
SmpA/OmlA domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_23545_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3150..3869
DNA (720bp) protein (240aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
dihydrodipicolinate reductase-like id=12550776 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_23545_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3879..4544
DNA (666bp) protein (222aa)
mota/tolq/exbb proton channel id=12550775 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
mota/tolq/exbb proton channel
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_23545_curated_8
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4544..4981
DNA (438bp) protein (146aa)
biopolymer transport protein ExbD/TolR id=12550774 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
biopolymer transport protein ExbD/TolR
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_23545_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5057..5311)
DNA (255bp) protein (85aa)
mechanosensitive ion channel protein MscS n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037484BD
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:GAD23385.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
mechanosensitive ion channel protein MscS; K16053 miniconductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_23545_curated_10
unknown

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5713..5802
DNA (90bp) protein (30aa)

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Displaying 10 items

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