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SCNpilot_expt_1000_bf_scaffold_1978_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1978_curated_1
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..211
DNA (210bp) protein (70aa)
ATP-dependent Clp protease ATP-binding protein ClpA n=1 Tax=Acidovorax sp. KKS102 RepID=K0HSD5_9BURK
ATP-dependent Clp protease ATP-binding protein ClpA
ATP-dependent Clp protease ATP-binding protein ClpA {ECO:0000313|EMBL:AFU45893.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_2
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(323..2371)
DNA (2049bp) protein (683aa)
AsmA family protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I414_9BURK
AsmA family protein {ECO:0000313|EMBL:AFU45894.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
AsmA family protein
SCNpilot_expt_1000_bf_scaffold_1978_curated_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2691..3599
DNA (909bp) protein (303aa)
Pseudouridine synthase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0U7_9BURK
pseudouridine synthase
Pseudouridine synthase {ECO:0000313|EMBL:AFU45895.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4415..5911)
DNA (1497bp) protein (499aa)
Succinic semialdehyde dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9V7_9BURK
succinate-semialdehyde dehydrogenase
Succinic semialdehyde dehydrogenase {ECO:0000313|EMBL:AFU45896.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_5
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6077..6895)
DNA (819bp) protein (273aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidovorax sp. KKS102 RepID=K0HY95_9BURK
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AFU45897.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6937..8199)
DNA (1263bp) protein (421aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidovorax sp. KKS102 RepID=K0HSE4_9BURK
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AFU45898.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8259..9293)
DNA (1035bp) protein (345aa)
Family 1 extracellular solute-binding protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I424_9BURK
family 1 extracellular solute-binding protein
Family 1 extracellular solute-binding protein {ECO:0000313|EMBL:AFU45899.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9400..10497)
DNA (1098bp) protein (366aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
ABC transporter-like protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0V3_9BURK
ABC transporter-like protein
SCNpilot_expt_1000_bf_scaffold_1978_curated_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10541..11920)
DNA (1380bp) protein (460aa)
4-aminobutyrate aminotransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9W1_9BURK
4-aminobutyrate aminotransferase
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:AFU45901.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_10
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12036..13454
DNA (1419bp) protein (473aa)
GntR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYA0_9BURK
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AFU45902.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_11
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13631..14305)
DNA (675bp) protein (225aa)
GntR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0HSF0_9BURK
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AFU45903.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14376..15398)
DNA (1023bp) protein (341aa)
ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I430_9BURK
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AFU45904.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15459..16724)
DNA (1266bp) protein (422aa)
TRAP dicarboxylate transporter subunit DctM n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0W1_9BURK
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter subunit DctM {ECO:0000313|EMBL:AFU45905.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_14
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16782..17429)
DNA (648bp) protein (216aa)
Tripartite ATP-independent periplasmic n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9W4_9BURK
tripartite ATP-independent periplasmic
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_1000_bf_scaffold_1978_curated_15
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17569..18936)
DNA (1368bp) protein (456aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Acidovorax radicis RepID=UPI0002377B81
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_1978_curated_16
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18933..19220)
DNA (288bp) protein (96aa)
ferredoxin-containing oxidase n=1 Tax=Acidovorax radicis RepID=UPI0002377B80
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_1000_bf_scaffold_1978_curated_17
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19217..20332)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I439_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45909.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_18
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20360..21307)
DNA (948bp) protein (316aa)
Proline racemase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0W6_9BURK
proline racemase
Proline racemase {ECO:0000313|EMBL:AFU45910.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_19
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21344..22261)
DNA (918bp) protein (306aa)
Dihydrodipicolinate synthetase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9W8_9BURK
dihydrodipicolinate synthetase
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:AFU45911.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_20
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22445..22681)
DNA (237bp) protein (79aa)
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCNpilot_expt_1000_bf_scaffold_1978_curated_21
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24049..24639)
DNA (591bp) protein (197aa)
id=12552006 bin=BDI tax=BDI organism_group=Betaproteobacteria
Tax=RBG_16_Gallionellales_57_15_curated
SCNpilot_expt_1000_bf_scaffold_1978_curated_22
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24792..25139
DNA (348bp) protein (116aa)
alaS; alanyl-tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Alanine--tRNA ligase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYB1_9BURK
SCNpilot_expt_1000_bf_scaffold_1978_curated_23
unknown

Not on your lists

comp(25650..25778)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1978_curated_24
unknown

Not on your lists

comp(26118..26684)
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1978_curated_25
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26800..28230
DNA (1431bp) protein (477aa)
Metal dependent phosphohydrolase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HSG2_9BURK
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AFU45913.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1978_curated_26
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28343..29059)
DNA (717bp) protein (239aa)
Diguanylate cyclase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I445_9BURK
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AFU45914.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Displaying 26 items

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