ggKbase home page

SCNpilot_cont_750_p_scaffold_1023_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_1023_curated_1
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..2343)
DNA (2343bp) protein (781aa)
type I secretion target GGXGXDXXX repeat-containing protein, partial n=1 Tax=Aeromonas caviae RepID=UPI00021984D0
Uncharacterized protein {ECO:0000313|EMBL:KDV01554.1}; Flags: Fragment;; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
type I secretion target GGXGXDXXX repeat-containing protein
SCNpilot_cont_750_p_scaffold_1023_curated_2
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3088..4524
DNA (1437bp) protein (479aa)
Cytochrome c-552 {ECO:0000256|SAAS:SAAS00233541}; EC=1.7.2.2 {ECO:0000256|SAAS:SAAS00233490};; Ammonia-forming cytochrome c nitrite reductase {ECO:0000256|HAMAP-Rule:MF_01182}; Flags: Precursor;; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
nrfA; cytochrome c552 (EC:1.7.2.2); K03385 cytochrome c-552 [EC:1.7.2.2]
cytochrome C nitrite reductase subunit c552 n=1 Tax=Aeromonas caviae RepID=UPI00021984D1
SCNpilot_cont_750_p_scaffold_1023_curated_3
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4576..5169
DNA (594bp) protein (198aa)
Cytochrome c nitrite reductase, pentaheme subunit n=1 Tax=Aeromonas veronii AMC34 RepID=K1IR69_9GAMM
Cytochrome C {ECO:0000313|EMBL:KEP91876.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
cytochrome c-type protein NrfB; K04013 cytochrome c-type protein NrfB
SCNpilot_cont_750_p_scaffold_1023_curated_4
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5166..5858
DNA (693bp) protein (231aa)
4Fe-4S ferredoxin n=1 Tax=Aeromonas hydrophila ML09-119 RepID=R4VD14_AERHY
4Fe-4S ferredoxin
Nitrite reductase {ECO:0000313|EMBL:KGY50076.1}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
SCNpilot_cont_750_p_scaffold_1023_curated_5
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5946..6899
DNA (954bp) protein (318aa)
formate-dependent nitrite reductase subunit NrfD n=1 Tax=Aeromonas hydrophila RepID=UPI0002DFBC6D
protein NrfD
Cytochrome c nitrite reductase, NrfD subunit {ECO:0000313|EMBL:EKB21229.1}; TaxID=1073385 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii AMC35.;"
SCNpilot_cont_750_p_scaffold_1023_curated_6
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7062..9023
DNA (1962bp) protein (654aa)
heme lyase subunit CcmF n=1 Tax=Aeromonas hydrophila RepID=UPI0003656E13
Cytochrome C biogenesis protein CcmF {ECO:0000313|EMBL:KGY50078.1}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
cytochrome c-type biogenesis protein CcmF
SCNpilot_cont_750_p_scaffold_1023_curated_7
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9020..9619
DNA (600bp) protein (200aa)
Thiol:disulfide interchange protein DsbE n=1 Tax=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) RepID=A0KL32_AERHH
thiol:disulfide interchange protein DsbE
Thiol:disulfide interchange protein DsbE {ECO:0000313|EMBL:ABK38864.1}; TaxID=380703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 /; JCM 1027 / KCTC 2358 / NCIMB 9240).;"
SCNpilot_cont_750_p_scaffold_1023_curated_8
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9616..10806
DNA (1191bp) protein (397aa)
nitrite reductase n=1 Tax=Aeromonas hydrophila RepID=UPI0002EE4248
Cytochrome c nitrite reductase, accessory protein NrfF {ECO:0000313|EMBL:EKB28975.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
formate-dependent nitrite reductase complex subunit NrfF
SCNpilot_cont_750_p_scaffold_1023_curated_9
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11157..12077
DNA (921bp) protein (307aa)
D-alanyl-D-alanine carboxypeptidase; K07262 D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
peptidase S11 n=1 Tax=Aeromonas caviae RepID=UPI0002198710
Peptidase S11 {ECO:0000313|EMBL:KDV01804.1}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
SCNpilot_cont_750_p_scaffold_1023_curated_10
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12379..13899
DNA (1521bp) protein (507aa)
cryptochrome/photolyase n=1 Tax=Aeromonas caviae RepID=UPI0002198712
Photolyase {ECO:0000313|EMBL:KDV01805.1}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
Cryptochrome/photolyase; K06876 deoxyribodipyrimidine photolyase-related protein
SCNpilot_cont_750_p_scaffold_1023_curated_11
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14053..15306
DNA (1254bp) protein (418aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
dadA; D-amino acid dehydrogenase small subunit; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase small subunit n=1 Tax=Aeromonas caviae RepID=UPI0002198713
SCNpilot_cont_750_p_scaffold_1023_curated_12
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15383..16507)
DNA (1125bp) protein (375aa)
membrane protein n=1 Tax=Aeromonas caviae RepID=UPI0002198716
Membrane protein {ECO:0000313|EMBL:KGY76900.1}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
HPP family protein; K07168 CBS domain-containing membrane protein
SCNpilot_cont_750_p_scaffold_1023_curated_13
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16684..17796
DNA (1113bp) protein (371aa)
heptosyltransferase n=1 Tax=Aeromonas caviae RepID=UPI0002198717
Heptosyltransferase {ECO:0000313|EMBL:KEP91885.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
heptosyltransferase family protein
SCNpilot_cont_750_p_scaffold_1023_curated_14
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17891..20155)
DNA (2265bp) protein (755aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydr
metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Aeromonas caviae RepID=UPI0002198718
SCNpilot_cont_750_p_scaffold_1023_curated_15
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20317..21252
DNA (936bp) protein (312aa)
XRE family transcriptional regulator n=1 Tax=Aeromonas caviae RepID=UPI0002198719
XRE family transcriptional regulator {ECO:0000313|EMBL:KGY76903.1}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
HTH-type transcriptional regulator MetR
SCNpilot_cont_750_p_scaffold_1023_curated_16
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21326..22156)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Aeromonas caviae RepID=UPI000219871A
Siderophore ferric iron reductase {ECO:0000313|EMBL:KEP91888.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_1023_curated_17
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22195..24339)
DNA (2145bp) protein (715aa)
ligand-gated channel protein n=1 Tax=Aeromonas caviae RepID=UPI000219871B
Ligand-gated channel protein {ECO:0000313|EMBL:KDV01641.1}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
ferrichrome-iron receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_750_p_scaffold_1023_curated_18
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24708..26288
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Aeromonas caviae RepID=UPI000219871C
Diguanylate cyclase {ECO:0000313|EMBL:KDV01642.1}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
diguanylate cyclase YdeH
SCNpilot_cont_750_p_scaffold_1023_curated_19
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26254..26889
DNA (636bp) protein (212aa)
EAL domain-containing protein n=1 Tax=Aeromonas caviae RepID=UPI000219871D
Diguanylate phosphodiesterase {ECO:0000313|EMBL:KDV01643.1}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
SCNpilot_cont_750_p_scaffold_1023_curated_20
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26914..27846
DNA (933bp) protein (311aa)
EAL domain-containing protein n=1 Tax=Aeromonas caviae RepID=UPI000219871D
Diguanylate phosphodiesterase {ECO:0000313|EMBL:KDV01643.1}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
EAL domain-containing protein
SCNpilot_cont_750_p_scaffold_1023_curated_21
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27843..28667)
DNA (825bp) protein (275aa)
AraC family transcriptional regulator n=1 Tax=Aeromonas caviae RepID=UPI000219871E
AraC family transcriptional regulator {ECO:0000313|EMBL:KGY73760.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
AraC family transcriptional regulator; K13653 AraC family transcriptional regulator
SCNpilot_cont_750_p_scaffold_1023_curated_22
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28859..29758)
DNA (900bp) protein (300aa)
LysR family transcriptional regulator n=1 Tax=Aeromonas caviae RepID=UPI000219871F
LysR family transcriptional regulator {ECO:0000313|EMBL:KEP91890.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
LysR family transcriptional regulator
SCNpilot_cont_750_p_scaffold_1023_curated_23
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29859..30497
DNA (639bp) protein (213aa)
3-beta hydroxysteroid dehydrogenase n=1 Tax=Aeromonas caviae RepID=UPI0002198720
3-beta hydroxysteroid dehydrogenase {ECO:0000313|EMBL:KGY67313.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
hypothetical protein; K07118
SCNpilot_cont_750_p_scaffold_1023_curated_24
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30845..31867
DNA (1023bp) protein (341aa)
2-oxobutyrate oxidase n=1 Tax=Aeromonas hydrophila RepID=UPI00037EF1F2
2-oxobutyrate oxidase {ECO:0000313|EMBL:KGY72405.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
2OG-Fe(II) oxygenase; K06892
SCNpilot_cont_750_p_scaffold_1023_curated_25
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31961..33124
DNA (1164bp) protein (388aa)
Methionine gamma-lyase {ECO:0000313|EMBL:KGY76910.1}; EC=4.4.1.11 {ECO:0000313|EMBL:KGY76910.1};; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
methionine gamma-lyase n=1 Tax=Aeromonas caviae RepID=UPI0002198721
methionine gamma-lyase
SCNpilot_cont_750_p_scaffold_1023_curated_26
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33209..34066)
DNA (858bp) protein (286aa)
folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
methenyltetrahydrofolate cyclohydrolase n=1 Tax=Aeromonas caviae RepID=UPI0002198722
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
SCNpilot_cont_750_p_scaffold_1023_curated_trna_1
unknown

Not on your lists

34270..34343
DNA (74bp)
transferRNA
SCNpilot_cont_750_p_scaffold_1023_curated_trna_2
unknown

Not on your lists

34389..34447
DNA (59bp)
transferRNA
Displaying 28 items

View Taxonomy