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SCNpilot_expt_1000_bf_scaffold_6391_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6391_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..932
DNA (930bp) protein (310aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNF5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39888.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_6391_curated_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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932..1630
DNA (699bp) protein (233aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PBE1_9BRAD
SCNpilot_expt_1000_bf_scaffold_6391_curated_3
unknown

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comp(1579..1830)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6391_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1962..2684
DNA (723bp) protein (241aa)
DNA polymerase III subunit delta' (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA polymerase III subunit delta'''' n=1 Tax=Afipia birgiae RepID=UPI0002F47A70
Uncharacterized protein {ECO:0000313|EMBL:EKS39886.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_6391_curated_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2764..4788
DNA (2025bp) protein (675aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
metG; methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PGN7_9BRAD
SCNpilot_expt_1000_bf_scaffold_6391_curated_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4794..5588
DNA (795bp) protein (265aa)
deoxyribonuclease (ycfH) (EC:3.1.21.-); K03424 TatD DNase family protein [EC:3.1.21.-]
TatD family hydrolase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PK89_9BRAD
TatD family hydrolase {ECO:0000313|EMBL:EKS39940.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_6391_curated_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5585..6379
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PEF9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39941.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K06167 PhnP protein
SCNpilot_expt_1000_bf_scaffold_6391_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6381..6905)
DNA (525bp) protein (175aa)
acyl-CoA synthetase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB94_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39882.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_6391_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6902..8032)
DNA (1131bp) protein (377aa)
acyl-CoA synthetase n=1 Tax=Afipia birgiae RepID=UPI0002E0327C
Uncharacterized protein {ECO:0000313|EMBL:EKS41416.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative AMP-binding enzyme
SCNpilot_expt_1000_bf_scaffold_6391_curated_10
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8476..9168)
DNA (693bp) protein (231aa)
arabinose ABC transporter permease n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036873A8
Uncharacterized protein {ECO:0000313|EMBL:ETR79072.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6391_curated_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9162..9701)
DNA (540bp) protein (180aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IQZ9_RHOP2
Uncharacterized protein {ECO:0000313|EMBL:ETR79072.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_6391_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10184..11305
DNA (1122bp) protein (374aa)
Agglutination protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QN01_9BRAD
Agglutination protein {ECO:0000313|EMBL:EGP07504.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
type I secretion outer membrane protein, TolC; K12543 outer membrane protein LapE
SCNpilot_expt_1000_bf_scaffold_6391_curated_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11888..14107
DNA (2220bp) protein (740aa)
ABC transporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QN02_9BRAD
ABC transporter {ECO:0000313|EMBL:EGP07505.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ABC transporter; K12541 ATP-binding cassette, subfamily C, bacterial LapB rbh
SCNpilot_expt_1000_bf_scaffold_6391_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14094..15344
DNA (1251bp) protein (417aa)
hemolysin secretion protein D n=1 Tax=Afipia birgiae RepID=UPI00031B4329
HlyD family type I secretion membrane fusion protein {ECO:0000313|EMBL:EKS39418.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
type I secretion membrane fusion protein, HlyD; K12542 membrane fusion protein LapC
Displaying 14 items

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