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SCNpilot_expt_1000_bf_scaffold_1125_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1125_curated_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..247
DNA (246bp) protein (82aa)
Glutaredoxin 3 n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P5G0_9BRAD
Glutaredoxin 3 {ECO:0000313|EMBL:EKS33678.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
glutaredoxin; K03676 glutaredoxin 3
SCNpilot_expt_1000_bf_scaffold_1125_curated_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247..1134
DNA (888bp) protein (296aa)
amidohydrolase n=1 Tax=Afipia birgiae RepID=UPI0002FCFC10
Carbon-nitrogen hydrolase {ECO:0000313|EMBL:EGP09732.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_1125_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1131..1598
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D59FCD
Uncharacterized protein {ECO:0000313|EMBL:EKS37313.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1125_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1620..2069
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P765_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37316.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K08978 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_1125_curated_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2071..2970)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGJ6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09736.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1125_curated_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3104..3853)
DNA (750bp) protein (250aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGQ5_9BRAD
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_1125_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3872..4327)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P954_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37319.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1125_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4490..5743
DNA (1254bp) protein (418aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
aspartate kinase n=1 Tax=Afipia birgiae RepID=UPI00030C30CC
SCNpilot_expt_1000_bf_scaffold_1125_curated_9
unknown

Not on your lists

comp(5951..6310)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1125_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6779..8281
DNA (1503bp) protein (501aa)
phosphoenolpyruvate-protein phosphotransferase PtsP; K08484 phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P769_9BRAD
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000313|EMBL:EKS37321.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1125_curated_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8340..9422
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 n=2 Tax=Bradyrhizobiaceae RepID=F7QGR0_9BRAD
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
prfA; peptide chain release factor 1; K02835 peptide chain release factor 1
SCNpilot_expt_1000_bf_scaffold_1125_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9419..10303
DNA (885bp) protein (295aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sourc
HemK family modification methylase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG35_9BRAD
SCNpilot_expt_1000_bf_scaffold_1125_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10766..11701
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P959_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37324.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1125_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11566..11937)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCJ8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37325.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1125_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12466..13233
DNA (768bp) protein (256aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
gloB; hydroxyacylglutathione hydrolase GloB (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P773_9BRAD
SCNpilot_expt_1000_bf_scaffold_1125_curated_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13233..13670
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGR5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09521.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein; K09705 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1125_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13718..14590)
DNA (873bp) protein (291aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI000310A403
Uncharacterized protein {ECO:0000313|EMBL:EKS37328.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1125_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14660..15385)
DNA (726bp) protein (242aa)
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:EGP09523.1}; EC=1.1.1.36 {ECO:0000313|EMBL:EGP09523.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
acetoacetyl CoA reductase; K00023 acetoacetyl-CoA reductase [EC:1.1.1.36]
Acetoacetyl-CoA reductase n=2 Tax=Bradyrhizobiaceae RepID=F7QGR7_9BRAD
SCNpilot_expt_1000_bf_scaffold_1125_curated_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15545..16720)
DNA (1176bp) protein (392aa)
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ABD05220.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ABD05220.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Acetyl-CoA acetyltransferase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J2U0_RHOP2
SCNpilot_expt_1000_bf_scaffold_1125_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17020..17631
DNA (612bp) protein (204aa)
Polyhydroxyalkanoate synthesis repressor PhaR n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P777_9BRAD
Polyhydroxyalkanoate synthesis repressor PhaR {ECO:0000313|EMBL:EKS37331.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
polyhydroxyalkanoate synthesis repressor PhaR
SCNpilot_expt_1000_bf_scaffold_1125_curated_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17701..17907)
DNA (207bp) protein (69aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NTP8_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS33697.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1125_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17941..19482)
DNA (1542bp) protein (514aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P458_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS37332.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1125_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19702..20016
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG45_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37333.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1125_curated_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20023..20778)
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGS2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09528.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1125_curated_25
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20944..21126)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=3 Tax=Bradyrhizobiaceae RepID=F7QGS3_9BRAD
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
SCNpilot_expt_1000_bf_scaffold_1125_curated_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21267..21941)
DNA (675bp) protein (225aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase MtgA (EC:2.4.2.-); K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGS4_9BRAD
SCNpilot_expt_1000_bf_scaffold_1125_curated_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22089..23015
DNA (927bp) protein (309aa)
geranyltranstransferase (EC:2.5.1.10); K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P463_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37337.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1125_curated_28
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23023..23703
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGS8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09534.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1125_curated_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23711..25318
DNA (1608bp) protein (536aa)
Na+/H+ antiporter n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P970_9BRAD
Na+/H+ antiporter {ECO:0000313|EMBL:EKS37339.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
SCNpilot_expt_1000_bf_scaffold_1125_curated_30
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25348..26634)
DNA (1287bp) protein (429aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Bradyrhizobiaceae RepID=F7QGT0_9BRAD
Displaying items 1-30 of 36 in total

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