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SCNpilot_expt_1000_bf_scaffold_3166_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3166_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18..722
DNA (705bp) protein (235aa)
Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG71_9BRAD
Phosphate regulon transcriptional regulatory protein phoB {ECO:0000313|EMBL:EKS41637.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
SCNpilot_expt_1000_bf_scaffold_3166_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1183..2109
DNA (927bp) protein (309aa)
pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Afipia birgiae RepID=UPI0002F5DE1A
Coenzyme PQQ synthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653, ECO:0000256|SAAS:SAAS00055095}; Pyrroloquinoline quinone biosynthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
pyrroloquinoline quinone biosynthesis protein PqqB; K06136 pyrroloquinoline quinone biosynthesis protein B
SCNpilot_expt_1000_bf_scaffold_3166_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2106..2870
DNA (765bp) protein (255aa)
Pyrroloquinoline-quinone synthase {ECO:0000256|HAMAP-Rule:MF_00654}; EC=1.3.3.11 {ECO:0000256|HAMAP-Rule:MF_00654};; Coenzyme PQQ synthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; Pyrroloquinoline quinone biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
coenzyme PQQ biosynthesis protein C (EC:1.3.3.11); K06137 pyrroloquinoline-quinone synthase [EC:1.3.3.11]
Pyrroloquinoline-quinone synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PS54_9BRAD
SCNpilot_expt_1000_bf_scaffold_3166_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2870..3184
DNA (315bp) protein (105aa)
Coenzyme PQQ synthesis protein D n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIX0_9BRAD
Coenzyme PQQ synthesis protein D {ECO:0000313|EMBL:EKS39485.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
coenzyme PQQ synthesis D; K06138 pyrroloquinoline quinone biosynthesis protein D
SCNpilot_expt_1000_bf_scaffold_3166_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3181..4383
DNA (1203bp) protein (401aa)
Coenzyme PQQ synthesis protein E n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PD54_9BRAD
Coenzyme PQQ synthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; Pyrroloquinoline quinone biosynthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K06139 pyrroloquinoline quinone biosynthesis protein E
SCNpilot_expt_1000_bf_scaffold_3166_curated_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4373..5341
DNA (969bp) protein (323aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
proline iminopeptidase; K01259 proline iminopeptidase [EC:3.4.11.5]
Proline iminopeptidase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLR3_9BRAD
SCNpilot_expt_1000_bf_scaffold_3166_curated_7
unknown

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comp(5599..5778)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3166_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5784..6926
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PM83_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39488.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative membrane-bound dehydrogenase oxidoreductase protein
SCNpilot_expt_1000_bf_scaffold_3166_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7022..7585
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFF3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39489.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative cytochrome c4
SCNpilot_expt_1000_bf_scaffold_3166_curated_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7599..7931)
DNA (333bp) protein (111aa)
cytochrome C554 n=1 Tax=Afipia birgiae RepID=UPI0002E40B8B
Cytochrome c4 {ECO:0000313|EMBL:EGP07917.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
cytochrome c class I
SCNpilot_expt_1000_bf_scaffold_3166_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8119..9294)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PD59_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39491.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NHL repeat containing protein
SCNpilot_expt_1000_bf_scaffold_3166_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9454..10083)
DNA (630bp) protein (210aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256
molybdopterin-guanine dinucleotide biosynthesis protein MobA; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMP4_9BRAD
SCNpilot_expt_1000_bf_scaffold_3166_curated_13
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10196..10723
DNA (528bp) protein (176aa)
molybdopterin-guanine dinucleotide biosynthesis protein B n=1 Tax=Bradyrhizobium japonicum RepID=UPI000362A207
Molybdopterin-guanine dinucleotide biosynthesis protein B, mobB {ECO:0000313|EMBL:CCE11571.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
mobB; molybdopterin-guanine dinucleotide biosynthesis protein B; K03753 molybdopterin-guanine dinucleotide biosynthesis protein B
SCNpilot_expt_1000_bf_scaffold_3166_curated_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10723..10959
DNA (237bp) protein (79aa)
SirA-like protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
SirA-like protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYJ1_9BRAD
SirA-like protein {ECO:0000313|EMBL:EAQ34951.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_expt_1000_bf_scaffold_3166_curated_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10971..11393)
DNA (423bp) protein (141aa)
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E1CA6C
SCNpilot_expt_1000_bf_scaffold_3166_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11390..12046)
DNA (657bp) protein (219aa)
aldolase (EC:4.1.2.17)
aldolase n=1 Tax=Afipia birgiae RepID=UPI00031069DA
Uncharacterized protein {ECO:0000313|EMBL:EKS39493.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3166_curated_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12564..12998
DNA (435bp) protein (145aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:ABE39089.1}; EC=1.1.1.31 {ECO:0000313|EMBL:ABE39089.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13A00_RHOPS
SCNpilot_expt_1000_bf_scaffold_3166_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13034..13825
DNA (792bp) protein (264aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
Hydroxypyruvate isomerase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIX9_9BRAD
SCNpilot_expt_1000_bf_scaffold_3166_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13822..15096
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PNI8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42359.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3166_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15112..15573)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIY9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39505.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3166_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15759..15992)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PD73_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39506.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3166_curated_22
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17072..18178)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TME2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP65742.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_3166_curated_23
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18324..18641
DNA (318bp) protein (106aa)
Signal transduction histidine kinase {ECO:0000313|EMBL:ABA03382.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABA03382.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Signal transduction histidine kinase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SWF9_NITWN
Signal transduction histidine kinase
Displaying 23 items

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