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SCNpilot_expt_1000_bf_scaffold_1472_curated

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1472_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..246)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DD6BF4
Uncharacterized protein {ECO:0000313|EMBL:EGP09201.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(261..1052)
DNA (792bp) protein (264aa)
acyl-CoA thioesterase n=1 Tax=Afipia birgiae RepID=UPI000364D429
TesB-like acyl-CoA thioesterase {ECO:0000313|EMBL:EGP09202.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1325..1552
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYG8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34226.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1472_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1668..3365)
DNA (1698bp) protein (566aa)
MFS transporter n=1 Tax=Afipia birgiae RepID=UPI00030FD0DD
Uncharacterized protein {ECO:0000313|EMBL:EKS34225.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3481..3915)
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P4R0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09205.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_1472_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4027..5022)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P755_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34223.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
twin-arginine translocation pathway signal
SCNpilot_expt_1000_bf_scaffold_1472_curated_7
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5127..6305)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034818C2
Uncharacterized protein {ECO:0000313|EMBL:CCE04445.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6563..7510
DNA (948bp) protein (316aa)
TRAP transporter solute receptor n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QI04_9BRAD
TAXI family TRAP transporter solute receptor {ECO:0000313|EMBL:EKS33415.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
immunogenic protein precursor; K07080
SCNpilot_expt_1000_bf_scaffold_1472_curated_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7703..8314
DNA (612bp) protein (204aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NW69_9BRAD
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:EKS33416.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
trap transporter 4tm/12tm fusion protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8311..9786
DNA (1476bp) protein (492aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NW69_9BRAD
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:EKS33416.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
TRAP transport system, permease
SCNpilot_expt_1000_bf_scaffold_1472_curated_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9812..11101
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V774_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI51084.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11195..13066
DNA (1872bp) protein (624aa)
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:EGP09210.1}; EC=6.2.1.1 {ECO:0000313|EMBL:EGP09210.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
propionate--CoA ligase (EC:6.2.1.17); K01908 propionyl-CoA synthetase [EC:6.2.1.17]
Acetyl-coenzyme A synthetase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QI07_9BRAD
SCNpilot_expt_1000_bf_scaffold_1472_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13180..13437
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NV78_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34217.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_14
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13484..13696
DNA (213bp) protein (71aa)
PhnA protein; K06193 phosphonoacetate hydrolase [EC:3.11.1.2]
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003828201
Uncharacterized protein {ECO:0000313|EMBL:EKS33421.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1472_curated_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13754..14428
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKC8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29566.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DsbA family protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14449..14706)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P745_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34213.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_17
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14767..15465)
DNA (699bp) protein (233aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NY58_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09216.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein; K09987 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_18
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15660..16637
DNA (978bp) protein (326aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ispH1; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P167_9BRAD
SCNpilot_expt_1000_bf_scaffold_1472_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16639..17604
DNA (966bp) protein (322aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
thrB; homoserine kinase (EC:2.7.1.39); K02204 homoserine kinase type II [EC:2.7.1.39] rbh
Homoserine kinase n=2 Tax=Bradyrhizobiaceae RepID=F7QI16_9BRAD
SCNpilot_expt_1000_bf_scaffold_1472_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17616..18065
DNA (450bp) protein (150aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rnhA; ribonuclease HI (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0F4_9BRAD
SCNpilot_expt_1000_bf_scaffold_1472_curated_21
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18142..18627)
DNA (486bp) protein (162aa)
alkyl hydroperoxide reductase n=1 Tax=Afipia birgiae RepID=UPI000318DC41
Peroxiredoxin {ECO:0000313|EMBL:EGP09221.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
peroxiredoxin
SCNpilot_expt_1000_bf_scaffold_1472_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18733..19584)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NV66_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34207.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1472_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19741..20412
DNA (672bp) protein (224aa)
UPF0301 protein HMPREF9695_04116 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYE4_9BRAD
UPF0301 protein HMPREF9695_04116 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07735 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1472_curated_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20572..23529)
DNA (2958bp) protein (986aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QI21_9BRAD
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EGP09224.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
multi-sensor diguanylate cyclase/phophodiesterase
SCNpilot_expt_1000_bf_scaffold_1472_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23640..24638)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0E8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34204.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NADPH quinone oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1472_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24722..24916
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P731_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34203.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1472_curated_27
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25269..25775
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NY66_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33434.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K13592 regulator of CtrA degradation
SCNpilot_expt_1000_bf_scaffold_1472_curated_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(25950..26177)
DNA (228bp) protein (76aa)
50S ribosomal protein L31 n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QI25_9BRAD
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
SCNpilot_expt_1000_bf_scaffold_1472_curated_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26339..28204
DNA (1866bp) protein (622aa)
ABC transporter, permease/ATP-binding protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NW84_9BRAD
ABC transporter, permease/ATP-binding protein {ECO:0000313|EMBL:EKS33436.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
bmrA; multidrug ABC transporter ATP-binding permease; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_1472_curated_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28213..28647)
DNA (435bp) protein (145aa)
putative acetyltransferase; K03827 putative acetyltransferase [EC:2.3.1.-]
N-acetyltransferase GCN5 n=1 Tax=Afipia birgiae RepID=UPI0002DFB669
Uncharacterized protein {ECO:0000313|EMBL:EKS37166.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Displaying items 1-30 of 54 in total

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