ggKbase home page

SCNpilot_expt_1000_bf_scaffold_696_curated

Search features with annotation key words

Displaying items 31-60 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_696_curated_31
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27139..28029)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0F2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31918.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative 6-phosphogluconate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_696_curated_32
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28056..28766)
DNA (711bp) protein (237aa)
GntR family transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000348179E
Uncharacterized protein {ECO:0000313|EMBL:ESY64065.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_696_curated_33
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28879..30102
DNA (1224bp) protein (408aa)
ABC transporter substrate-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003494CB0
Receptor family ligand binding region family protein 28 {ECO:0000313|EMBL:EHK65551.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
receptor family ligand binding region family protein 28
SCNpilot_expt_1000_bf_scaffold_696_curated_34
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30124..30984
DNA (861bp) protein (287aa)
ABC transporter permease n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034D81D4
Inner-membrane translocator {ECO:0000313|EMBL:EHK65552.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1
SCNpilot_expt_1000_bf_scaffold_696_curated_35
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30981..31952
DNA (972bp) protein (324aa)
ABC transporter permease n=1 Tax=Herbaspirillum lusitanum RepID=UPI0003144C59
ABC transporter permease {ECO:0000313|EMBL:KGY28011.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_696_curated_36
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31949..32674
DNA (726bp) protein (242aa)
ABC transporter (EC:3.6.3.-); K01995 branched-chain amino acid transport system ATP-binding protein
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002F2CE73
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KCB41848.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
SCNpilot_expt_1000_bf_scaffold_696_curated_37
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32671..33390
DNA (720bp) protein (240aa)
amino acid ABC transporter ATPase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000347EC58
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) {ECO:0000313|EMBL:CCH09831.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_expt_1000_bf_scaffold_696_curated_38
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33444..33848
DNA (405bp) protein (135aa)
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EGP08220.1}; EC=4.1.1.44 {ECO:0000313|EMBL:EGP08220.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
4-carboxymuconolactone decarboxylase (EC:4.1.1.44)
4-carboxymuconolactone decarboxylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QK51_9BRAD
SCNpilot_expt_1000_bf_scaffold_696_curated_39
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33913..34830)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBR9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37065.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_696_curated_40
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34947..35645
DNA (699bp) protein (233aa)
pirin n=1 Tax=Afipia birgiae RepID=UPI0002D29123
Pirin-like protein {ECO:0000313|EMBL:EKS37066.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Pirin-like protein; K06911
SCNpilot_expt_1000_bf_scaffold_696_curated_41
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35702..36301
DNA (600bp) protein (200aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000255|HAMAP-Rule:MF_01017}; EC=1.6.5.2 {ECO:0000255|HAMAP-Rule:MF_01017};; Flavoprotein WrbA; NAD(P)H:quinone oxidoreductase {ECO:0000255|HAMAP-Rule:MF_01017}; Short=NQO {ECO:0000255|HAMAP-Rule:MF_01017};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
NAD(P)H dehydrogenase (quinone) n=2 Tax=Oligotropha carboxidovorans RepID=NQOR_OLICO rbh
wrbA; flavoprotein WrbA; K03809 Trp repressor binding protein
SCNpilot_expt_1000_bf_scaffold_696_curated_42
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36491..37315
DNA (825bp) protein (275aa)
alpha/beta hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002EF287F
Bradyrhizobium elkanii strain UASWS1015 Contig180, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47173.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
non-heme haloperoxidase
SCNpilot_expt_1000_bf_scaffold_696_curated_43
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37385..37678)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P8E3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37069.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_696_curated_44
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37749..38123
DNA (375bp) protein (125aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P3H3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09980.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_696_curated_45
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38197..38394)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000374C67B
Uncharacterized protein {ECO:0000313|EMBL:EKS35256.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_696_curated_46
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38409..38882
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NY80_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09984.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_696_curated_47
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38953..39165)
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PAA5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35258.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_696_curated_48
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39420..39782)
DNA (363bp) protein (121aa)
Two-component response regulator n=3 Tax=Bradyrhizobiaceae RepID=F7QG44_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35259.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
response regulator receiver domain-containing protein; K13589 two-component system, cell cycle response regulator CpdR
SCNpilot_expt_1000_bf_scaffold_696_curated_49
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40014..40901
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6F6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37076.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
N-formylglutamate amidohydrolase
SCNpilot_expt_1000_bf_scaffold_696_curated_50
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41452..42234
DNA (783bp) protein (261aa)
histidinol-phosphate phosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
inositol monophosphatase n=1 Tax=Afipia birgiae RepID=UPI0002F9DBE9
Inositol monophosphatase family protein {ECO:0000313|EMBL:EGP09989.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_696_curated_51
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42265..43158)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFA5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37078.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_696_curated_52
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43253..44017
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PAB0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35263.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K07090
SCNpilot_expt_1000_bf_scaffold_696_curated_53
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44042..44461
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG50_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09992.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
peptidyl-tRNA hydrolase domain-containing protein; K15034 ribosome-associated protein
SCNpilot_expt_1000_bf_scaffold_696_curated_54
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44563..46419
DNA (1857bp) protein (619aa)
DNA mismatch repair protein MutL n=1 Tax=Afipia birgiae RepID=UPI0003043BAD
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL
SCNpilot_expt_1000_bf_scaffold_696_curated_55
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46427..47479)
DNA (1053bp) protein (351aa)
nucleotide sugar dehydrogenase (EC:1.1.1.132); K00066 GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
Nucleotide sugar dehydrogenase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NY87_9BRAD
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EKS35267.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_696_curated_56
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47763..48314)
DNA (552bp) protein (184aa)
methyltransferase (EC:2.1.1.-); K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
RsmD family RNA methyltransferase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PAB4_9BRAD
RsmD family RNA methyltransferase {ECO:0000313|EMBL:EKS35268.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_696_curated_57
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48314..48604)
DNA (291bp) protein (97aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFA9_9BRAD
SCNpilot_expt_1000_bf_scaffold_696_curated_58
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48571..50358)
DNA (1788bp) protein (596aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
pseudouridylate synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG55_9BRAD
SCNpilot_expt_1000_bf_scaffold_696_curated_59
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50528..50974
DNA (447bp) protein (149aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P6N0_9BRAD
zinc-binding CMP/dCMP deaminase
SCNpilot_expt_1000_bf_scaffold_696_curated_60
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50971..51420)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P1G8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35271.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
acetyltransferase
Displaying items 31-60 of 77 in total

View Taxonomy