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SCNpilot_expt_1000_bf_scaffold_1979_curated_19

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(19314..21038)

Top 3 Functional Annotations

Value Algorithm Source
1A family penicillin-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P983_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 579.0
  • Bit_score: 1006
  • Evalue 1.30e-290
1A family penicillin-binding protein {ECO:0000313|EMBL:EKS37354.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.6
  • Coverage: 579.0
  • Bit_score: 1006
  • Evalue 1.80e-290
pbpC; penicillin-binding protein similarity KEGG
DB: KEGG
  • Identity: 77.4
  • Coverage: 575.0
  • Bit_score: 871
  • Evalue 1.50e-250
  • rbh

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1725
ATGCGCGCAGCCGTCACCAATCTTCTGCATCGCGGCGTGTCACAAGGCGGCTCGACGCTGACGCAACAGCTCGCCAAGAACCTGTTCCTGACTCAGGAGCGCACCTTCCAGCGCAAGCTGCAGGAGGTCGAACTCGCGCTGTGGCTCGAGCGGAAATACTCGAAGAACGAAATTCTCGAACTTTATCTCAACCGCGTCTATTTCGGCTCAGGTGCCTACGGCGTCGAGGCGGCCGCGCAAAAGTATTTCGGCAAATCCGCCAAGAACGTTTCGCTGTCGGAAGCCGCAATGCTGGCGGGCCTCGTCAAATCGCCGTCCCGCCTTGCGCCCAACCGCAATCCGGAAGGCGCGGAAAAGCGTGCGCAGACCGTGCTGACCGCGATGGCGGATGTGAAGTTCATCACCAATGCGCAAGCCCAGGCCGCCATCGGCCATCCGTCCTATGCCGTGCGGCCGGTCGGTGCCGGCACCATCAACTACGTCGCCGACTGGATCGGCGAAGTGCTGGACGATCTGGTCGGCCAAATCGTCCAGAACATCGTGGTGGAGACCTCGATCGATCCCAAGCTGCAGAGCGTAGCCGAAGCTTCGATCATCGACGAACTGGCGACCAAGAGCGTGAAGTTCAACGTCTCGCAGGGTGCGCTGGTGGCGATGACTCCAAGCGGCGCGGTCCGCGCCATGGTCGGCGGGCGCAATTACGCCGAAAGCCAGTTCAACCGCGCGGTGACCGCGAAGCGCCAGCCCGGCTCGGCCTTCAAACCGTTCGTCTATCTCACCGCGATCGAAGCGGGCCTGACACCCGACACCGTGCGGCAGGATGCCCCGCTCGACGTGAAGGGCTGGCGGCCCGAGAATTACAGCCGCGAATATTTTGGCCCGGTGACGCTGACGCAGGCGCTCGCGATGTCGCTGAATACAGTCGCGGTGCGGCTCGGCCTCGAAGTCGGCCCGGCGAATGTGGTGCGCACCGCTCATCGTCTCGGCATCGCCTCGAAACTCGAACCCAACGCCACGATTTCGCTCGGCACCTCGGAAGTCTCGCTCAACGAACTGGTCGGCGCCTATACGCCGTTCGCCAATGGCGGCTTCGCAGCGTCGCCCTATGTGGTGAACCGGATCCGCACCAGCGAAGGCAAGGTGCTGTATGTCCACCGCAACGATCCGCCTGCGCGGGTGATCGATCCGAACGCGGTCGGTATGATGAACCTCATGATGCACGAAACGCTGACCATCGGCACCGCGAAGAAGGCGGACATTCCGGGCTGGTCGGCGGCGGGCAAGACCGGCACCAGCCAGGATTTCCGCGACGCCTGGTTCATCGGCTACACCGCGAACCTCGTCACCGGCGTATGGCTCGGCAACGACGACAATTCACCGACCAAGAAAGCCACGGGCGGCGGATTGCCGGTCGAGGTCTGGACCCGTTTCATGAAAGCCGCGCATCAGGGCGTGACACCTGTCCCCCTGCCAAGACCGACACAGCCGCAAGACGGCGGTTTCCTGTCAAATCTCTTTCCGGGACAACCGCGCTCCGCACCGGCTCAGCCGCAACCTTACCCGCAGCAATCCGCCAATGACGGTTATGTGCGGCCTCAGCCCGGCGCACCCGCACCCTATCCGCAACAGGCACGCCCACCGGTCACGCAGACCTCGACGCGGCCGGAAGCGGCTGCGGGTCTTGATGGCTGGTTGATCGATCGCGTGTTCGGCGGACGGCGCTGA
PROTEIN sequence
Length: 575
MRAAVTNLLHRGVSQGGSTLTQQLAKNLFLTQERTFQRKLQEVELALWLERKYSKNEILELYLNRVYFGSGAYGVEAAAQKYFGKSAKNVSLSEAAMLAGLVKSPSRLAPNRNPEGAEKRAQTVLTAMADVKFITNAQAQAAIGHPSYAVRPVGAGTINYVADWIGEVLDDLVGQIVQNIVVETSIDPKLQSVAEASIIDELATKSVKFNVSQGALVAMTPSGAVRAMVGGRNYAESQFNRAVTAKRQPGSAFKPFVYLTAIEAGLTPDTVRQDAPLDVKGWRPENYSREYFGPVTLTQALAMSLNTVAVRLGLEVGPANVVRTAHRLGIASKLEPNATISLGTSEVSLNELVGAYTPFANGGFAASPYVVNRIRTSEGKVLYVHRNDPPARVIDPNAVGMMNLMMHETLTIGTAKKADIPGWSAAGKTGTSQDFRDAWFIGYTANLVTGVWLGNDDNSPTKKATGGGLPVEVWTRFMKAAHQGVTPVPLPRPTQPQDGGFLSNLFPGQPRSAPAQPQPYPQQSANDGYVRPQPGAPAPYPQQARPPVTQTSTRPEAAAGLDGWLIDRVFGGRR*