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SCNpilot_expt_1000_bf_scaffold_1979_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1979_curated_1
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..422
DNA (420bp) protein (140aa)
cupin n=1 Tax=Methylobacterium sp. 88A RepID=UPI0003739754
Cupin {ECO:0000313|EMBL:KJC50438.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
cupin
SCNpilot_expt_1000_bf_scaffold_1979_curated_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(450..1103)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXR1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33244.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
saccharopine dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1979_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1629..3227)
DNA (1599bp) protein (533aa)
crotonobetaine/carnitine-CoA ligase; K02182 crotonobetaine/carnitine-CoA ligase [EC:6.2.1.-] rbh
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0S3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33245.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1979_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3400..4539
DNA (1140bp) protein (380aa)
adenylate cyclase n=1 Tax=Afipia birgiae RepID=UPI000360F2B5
Uncharacterized protein {ECO:0000313|EMBL:EKS37374.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4617..6578
DNA (1962bp) protein (654aa)
PAS domain S-box protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7B0_9BRAD
PAS domain S-box protein {ECO:0000313|EMBL:EKS37371.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
PAS/PAC sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_1979_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6606..7277)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000364509D
Uncharacterized protein {ECO:0000313|EMBL:EKS37366.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative enzyme with metallo-hydrolase/oxidoreductase domain, YcbL-like protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7380..9014)
DNA (1635bp) protein (545aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002DCC198
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS37365.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1979_curated_8
unknown

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9482..9814
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1979_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10163..11305)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P991_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37364.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
von Willebrand factor, type A
SCNpilot_expt_1000_bf_scaffold_1979_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11472..11945
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000319D6A6
Uncharacterized protein {ECO:0000313|EMBL:EKS37363.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11942..12529)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P485_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37362.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
heme oxygenase
SCNpilot_expt_1000_bf_scaffold_1979_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12566..12787)
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P0T9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09050.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12870..13424)
DNA (555bp) protein (185aa)
chemotaxis protein CheY n=1 Tax=Afipia birgiae RepID=UPI0002D41655
Photosynthetic apparatus regulatory protein regA {ECO:0000313|EMBL:EKS37360.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
response regulator receiver domain-containing protein; K15012 two-component system, response regulator RegA
SCNpilot_expt_1000_bf_scaffold_1979_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13541..14872)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
sensor signal transduction histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P986_9BRAD
SCNpilot_expt_1000_bf_scaffold_1979_curated_15
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14981..15775
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P4D3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09054.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15772..16602
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIG4_9BRAD
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein; K01992 ABC-2 type transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16755..18080
DNA (1326bp) protein (442aa)
polyhydroxyalkanoate depolymerase; K05973 poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] rbh
Polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P796_9BRAD
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:EKS37356.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1979_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18338..19177
DNA (840bp) protein (280aa)
Zinc metalloprotease {ECO:0000313|EMBL:EGP09057.1}; EC=3.4.24.- {ECO:0000313|EMBL:EGP09057.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Zinc metalloprotease n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIG6_9BRAD
zinc metallopeptidase; K07043
SCNpilot_expt_1000_bf_scaffold_1979_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19314..21038)
DNA (1725bp) protein (575aa)
1A family penicillin-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P983_9BRAD
1A family penicillin-binding protein {ECO:0000313|EMBL:EKS37354.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
pbpC; penicillin-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1979_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22206..22742
DNA (537bp) protein (179aa)
methylated-DNA-[protein]-cysteine S-methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
Methylated-DNA-[protein]-cysteine S-methyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P793_9BRAD
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:EKS37351.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1979_curated_21
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22743..25529)
DNA (2787bp) protein (929aa)
PII uridylyl-transferase; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGU2_9BRAD
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_1979_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25795..26769
DNA (975bp) protein (325aa)
Aliphatic sulfonates family ABC transporter, substrate-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P979_9BRAD
Aliphatic sulfonates family ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EKS37349.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter substrate-binding protein, aliphatic sulfonates; K15553 sulfonate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26869..27717
DNA (849bp) protein (283aa)
ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI0002E19F4F
Uncharacterized protein {ECO:0000313|EMBL:EKS37348.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
sulfonate ABC transporter permease; K15554 sulfonate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28292..28477
DNA (186bp) protein (62aa)
sulfonate ABC transporter ATP-binding protein; K15555 sulfonate transport system ATP-binding protein [EC:3.6.3.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P472_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37347.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1979_curated_25
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28531..29043
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P202_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33715.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
OsmC family protein
SCNpilot_expt_1000_bf_scaffold_1979_curated_26
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29209..30069)
DNA (861bp) protein (287aa)
DNA mismatch repair protein MutS n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGT9_9BRAD
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_1979_curated_27
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30099..31952)
DNA (1854bp) protein (618aa)
DNA mismatch repair protein MutS n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NZ26_9BRAD
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_1979_curated_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32156..33361
DNA (1206bp) protein (402aa)
pcaF; beta-ketoadipyl CoA thiolase; K07823 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] rbh
Beta-ketoadipyl-CoA thiolase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P975_9BRAD
Beta-ketoadipyl-CoA thiolase {ECO:0000313|EMBL:EKS37344.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1979_curated_29
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33488..33997)
DNA (510bp) protein (170aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGT6_9BRAD
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EGP09542.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
EmrB/QacA subfamily drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
Displaying 29 items

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