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SCNpilot_expt_1000_bf_scaffold_6410_curated_5

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: 4616..4963

Top 3 Functional Annotations

Value Algorithm Source
TRAP transporter, DctM subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRQ2_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 91.3
  • Coverage: 115.0
  • Bit_score: 219
  • Evalue 1.50e-54
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EKS42200.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.3
  • Coverage: 115.0
  • Bit_score: 219
  • Evalue 2.20e-54
TRAP C4-dicarboxylate transport system permease DctM subunit similarity KEGG
DB: KEGG
  • Identity: 83.8
  • Coverage: 111.0
  • Bit_score: 206
  • Evalue 4.30e-51

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 348
TTGATTTGGTTCGGCGTCATCCTCGGCGTGAACATGCAGACTTCGTTCATGCATCCGCCGTTCGGCTTCGCGCTGTTCTATCTGCGCTCGGTCGCTCCGAAAGAGGCCTACACCGATCGGGTCAGCGGCAAACGCATCGCGCCGGTGACGACCGGCCAGATTTATTGGGGCTCGGTGCCGTTCGTCATCATCCAGGTCATCATGGTCGGCCTCGTCATCGCATTCCCCGCGATGGTGATGCATTACAAGGGCGCGCTGTCGACCGTCGATCCGAACAAGGTGAAGATCGAAATTCCCCAGATGGAAATGCCGCAGCTGGATTTCGGACCGCCCGGCGGCGCGAAATAA
PROTEIN sequence
Length: 116
LIWFGVILGVNMQTSFMHPPFGFALFYLRSVAPKEAYTDRVSGKRIAPVTTGQIYWGSVPFVIIQVIMVGLVIAFPAMVMHYKGALSTVDPNKVKIEIPQMEMPQLDFGPPGGAK*