ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2910_curated_6

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(4681..5343)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, TetR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJX3_NITHX similarity UNIREF
DB: UNIREF100
  • Identity: 68.6
  • Coverage: 204.0
  • Bit_score: 279
  • Evalue 3.10e-72
Uncharacterized protein {ECO:0000313|EMBL:KIZ47849.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.9
  • Coverage: 199.0
  • Bit_score: 322
  • Evalue 5.90e-85
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 68.6
  • Coverage: 204.0
  • Bit_score: 279
  • Evalue 9.80e-73

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 663
ATGAAAAGCAAATCGAAAGCCGTTGCCGGAAAACGGCCTGGCCGAGTTCAGAGGCGTAAGGACCTGTTGGGTACGGTTTACGAAGTCATTTCGGAATCCGGAATTGACGGCGCCAGCATGCGACAAATTGCCGACCGTGCGGAAGTCAGCACCGGCACAATCAATTACCATTTTGGAAACAAGCAAAAGCTCATCATGGCGGCGCTTCAGGCCGCTTATGAAACTCCGTCGGAAGAGGGGCCTAGCTCTTCGCCATTGGGGCAGCTCAAGGTTTTTGCCTTCAGCCACATTTTCCGATCATCGAACGATCGGTTCTGGCGCTTTTGGGTCAACTATGCCGCTGCCGGTACAAGAAGCACCGAGTTGCGAAAACATCAAAACAGGCGCTTCGAGAAGCAGCTTGGATTCTGGAAGAAACTTATCGACAGCGCGATCGATGCCGGCGAATTGCCGGCGGATATCGACGCGCAGCGTACCTCCGAGAACCTGCTGATTTTCGCGCATGGACTGGTCATGCGCCAGATTTTGCGTCCGGATGCGGAAAATCGCGATCACTGCGAAAGGCTTCTCGAGGAATACTTCGAGGCTCTGGAGCGGGGTAAGTCCAAAGTGAATGAAAAAACTTCGAGGCCGTCGATCCGGGAATTATCCGAAATTCACTGA
PROTEIN sequence
Length: 221
MKSKSKAVAGKRPGRVQRRKDLLGTVYEVISESGIDGASMRQIADRAEVSTGTINYHFGNKQKLIMAALQAAYETPSEEGPSSSPLGQLKVFAFSHIFRSSNDRFWRFWVNYAAAGTRSTELRKHQNRRFEKQLGFWKKLIDSAIDAGELPADIDAQRTSENLLIFAHGLVMRQILRPDAENRDHCERLLEEYFEALERGKSKVNEKTSRPSIRELSEIH*