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SCNpilot_expt_1000_bf_scaffold_2910_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2910_curated_1
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..343)
DNA (342bp) protein (114aa)
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase n=1 Tax=Rhizobium sp. CF080 RepID=J2S605_9RHIZ
Rieske (2Fe-2S) iron-sulfur domain protein {ECO:0000313|EMBL:CDN56935.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Rieske (2Fe-2S) iron-sulfur domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1706..2083
DNA (378bp) protein (126aa)
Putative exported protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QMJ3_BORBO
Uncharacterized protein {ECO:0000313|EMBL:KIZ47879.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2167..2586)
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMZ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KIZ47851.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2586..3755)
DNA (1170bp) protein (390aa)
thiolase n=1 Tax=Amorphus coralli RepID=UPI0003612FD0
Uncharacterized protein {ECO:0000313|EMBL:KIZ47850.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
thiolase
SCNpilot_expt_1000_bf_scaffold_2910_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3783..4541)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000370D27D
Enoyl-CoA hydratase {ECO:0000313|EMBL:KIZ47878.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
enoyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_2910_curated_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4681..5343)
DNA (663bp) protein (221aa)
Transcriptional regulator, TetR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJX3_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KIZ47849.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2910_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5613..6413
DNA (801bp) protein (267aa)
ABC transporter ATP-binding protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QFL0_BORBO
Uncharacterized protein {ECO:0000313|EMBL:KIZ40757.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6410..7195
DNA (786bp) protein (262aa)
Putative membrane protein n=2 Tax=Bordetella RepID=K0M811_BORPB
ABC transporter permease {ECO:0000313|EMBL:KIZ40758.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7244..8812
DNA (1569bp) protein (523aa)
AMP-binding protein n=1 Tax=Burkholderia bryophila RepID=UPI000378B4B7
Uncharacterized protein {ECO:0000313|EMBL:KIZ40759.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
AMP-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9404..11161
DNA (1758bp) protein (586aa)
ATPase n=1 Tax=Afipia birgiae RepID=UPI00030EA5FA
Uncharacterized protein {ECO:0000313|EMBL:EKS42889.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K06915
SCNpilot_expt_1000_bf_scaffold_2910_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11258..11839
DNA (582bp) protein (194aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Alkylhydroperoxidase AhpD family core domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PN95_9BRAD
peroxidase-like protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11866..12330
DNA (465bp) protein (155aa)
Putative magnesium transporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLN3_9BRAD
Putative magnesium transporter {ECO:0000313|EMBL:EGP07886.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12327..12950)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PHZ2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42237.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ParB-like nuclease
SCNpilot_expt_1000_bf_scaffold_2910_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13187..13498
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKZ3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42236.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13657..13938
DNA (282bp) protein (94aa)
Acyl carrier protein n=5 Tax=Bradyrhizobiaceae RepID=F7QLN1_9BRAD
Acyl carrier protein AcpXL {ECO:0000313|EMBL:EKS42235.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13948..14421
DNA (474bp) protein (158aa)
(3R)-hydroxymyristoyl-(Acyl carrier protein) dehydratase {ECO:0000313|EMBL:EGP07883.1}; EC=4.2.1.- {ECO:0000313|EMBL:EGP07883.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
beta-hydroxyacyl-dehydratase; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]
3-hydroxyacyl-ACP dehydratase n=1 Tax=Afipia birgiae RepID=UPI000302EAC4
SCNpilot_expt_1000_bf_scaffold_2910_curated_17
unknown

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comp(14384..14917)
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2910_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15220..15609
DNA (390bp) protein (130aa)
3-oxoacyl-(acyl carrier protein) synthase II; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PV60_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42233.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2910_curated_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15624..15959
DNA (336bp) protein (112aa)
3-oxoacyl-(acyl carrier protein) synthase II; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
Beta-ketoacyl synthase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q216M4_RHOPB
Beta-ketoacyl synthase {ECO:0000313|EMBL:ABD87662.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_2910_curated_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16277..16864
DNA (588bp) protein (196aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-ACP synthase n=1 Tax=Afipia birgiae RepID=UPI0003028714
Uncharacterized protein {ECO:0000313|EMBL:EKS42882.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_2910_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16987..18009
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKY7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42231.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
alcohol dehydrogenase zinc-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18434..18901
DNA (468bp) protein (156aa)
lauroyl/myristoyl acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRU6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42230.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2910_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18902..20020)
DNA (1119bp) protein (373aa)
putrescine/spermidine ABC transporter substrate-binding protein n=1 Tax=Afipia birgiae RepID=UPI000318CC30
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
potF; putrescine ABC transporter periplasmic binding protein; K11073 putrescine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20034..21185)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PV44_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42228.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21193..21516)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PHV0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42227.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21650..23578)
DNA (1929bp) protein (643aa)
Probable potassium transport system protein kup n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKX1_9BRAD
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
kup; Kup family low affinity potassium transporter; K03549 KUP system potassium uptake protein
SCNpilot_expt_1000_bf_scaffold_2910_curated_27
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23796..24545)
DNA (750bp) protein (250aa)
Probable potassium transport system protein kup n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PMP6_9BRAD
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
low affinity potassium transporter; K03549 KUP system potassium uptake protein
Displaying 27 items

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