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SCNpilot_expt_1000_bf_scaffold_2910_curated_23

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(18902..20020)

Top 3 Functional Annotations

Value Algorithm Source
putrescine/spermidine ABC transporter substrate-binding protein n=1 Tax=Afipia birgiae RepID=UPI000318CC30 similarity UNIREF
DB: UNIREF100
  • Identity: 87.3
  • Coverage: 363.0
  • Bit_score: 646
  • Evalue 2.10e-182
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.4
  • Coverage: 369.0
  • Bit_score: 640
  • Evalue 1.70e-180
potF; putrescine ABC transporter periplasmic binding protein; K11073 putrescine transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 81.7
  • Coverage: 371.0
  • Bit_score: 613
  • Evalue 6.30e-173

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1119
ATGCGCATGCTTTTGAAGAGTGCCGTCCGCGTTGCCGTCGTCGCAGGCTCTCTGACGGCAGGGTTGCAGGCGCATGCGCAGCAGCGCGTCGTGAATTTCTACAACTGGTCGAACTATATGGCGCCCGGCGTCCTGGAACAGTTCACCAAGGAAACCGGCATCAAGGTCACGTACGATACGTTCGATGCCAACGAGACCCTGGAGACGCGCTTACTCGCGGGAAAGTCCGGCTACGACGTCGTGGTGCCGACGGCGTATTTCCTGCAGCGTCAGATCGCGGCGAAGGTATTTCAGAAGCTCGACAAGTCGAAGCTGCCGAACCTCGCCAATGCATGGCCGGAGGTGACCAAGCGTCTCGCAGTCTATGATCCGGGCAATGCGTTTGCCGCCAATTATATGTGGGGCACCACCGGCATCGGTTACAACATCAAGAAAGCGCAGGACGCTCTCGGCCTTGACGCGAAAATTGATGAGGTGATGAATTCCTGGGATGTCGTGTTCAAGCCGGAGAACCTTGCGAAGTTCAAGGACTGCGGCATTCACATGCTGGACTCCGCCGACGATATTCTCCCCGCGGCGCTGAACTATCTTGGCCTCGATCCGAATTCGACCAAGCAGGCCGATCTTGAAAAGGCGGCAGAGCTGGTCGGCAAGGTGCGGCCTGACGTGCGCAAGTTTCATTCGTCGGAATATCTGAGCGCGCTGGCGACCGGCGAAATCTGTCTGGTGGTTGGCTGGTCCGGCGACATCAAGCAGGCGCAGACCCGCGCGGCCGAGGCCAAGAACGGCATCGAGATCGGCTATGCGATTCCGAAAGAAGGCGCGCAGATGTTCTTCGACAATTTCGCCATTCCGGCGGATGCGCAGAACGTCACCGAGGCCCACGAGCTTATCAACTATCTCTATCGTACGGATGTCGCGGCGAAGAATTCGGATTTCCTGTCCTATGCGAACGGCAACCTGGCAAGCCAGAAGCTGATTGCGCCGAAGATCGTCAACGACAAGACAATCTATCCGGACGAGGCGACGATGAGCCACCTGTTCATCATCACGGCGCGCGATCCGGCAACGCAACGCATCATCAACCGGCTGTGGACGCGGGTGAAGATGGGGCGATAA
PROTEIN sequence
Length: 373
MRMLLKSAVRVAVVAGSLTAGLQAHAQQRVVNFYNWSNYMAPGVLEQFTKETGIKVTYDTFDANETLETRLLAGKSGYDVVVPTAYFLQRQIAAKVFQKLDKSKLPNLANAWPEVTKRLAVYDPGNAFAANYMWGTTGIGYNIKKAQDALGLDAKIDEVMNSWDVVFKPENLAKFKDCGIHMLDSADDILPAALNYLGLDPNSTKQADLEKAAELVGKVRPDVRKFHSSEYLSALATGEICLVVGWSGDIKQAQTRAAEAKNGIEIGYAIPKEGAQMFFDNFAIPADAQNVTEAHELINYLYRTDVAAKNSDFLSYANGNLASQKLIAPKIVNDKTIYPDEATMSHLFIITARDPATQRIINRLWTRVKMGR*