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SCNpilot_expt_1000_bf_scaffold_3704_curated_16

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: 16455..16847

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATC similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 130.0
  • Bit_score: 252
  • Evalue 2.60e-64
rnpO; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 96.9
  • Coverage: 130.0
  • Bit_score: 250
  • Evalue 2.90e-64
DNA-directed RNA polymerase subunit omega n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6W3_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 97.7
  • Coverage: 130.0
  • Bit_score: 252
  • Evalue 1.90e-64

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 393
ATGGCGCGCGTCACTGTTGAGGATTGTATTGACAAGGTCGACAACCGGTTCGACCTCGTTCTGCTGGCCGCCCACCGCGCCCGCATGATTTCGTCCGGATCGCCGCTGACGATTGATCGCGATAACGACAAGAATCCGGTCGTCTCGCTGCGGGAAATCGCCGAAACCACCATTTCTCCCGAGGATCTGAAGGAAGAACTGGTCCATTCGCTGCAGAAGTTCGTCGAAGTGGACGAGCCCGAGCCCGATACGGTTCCTTTGATCGGTTCCGCTGGCGCATCGGTGGATGCGGACGACACCGAGGTGTCTGTCGAGCGTATGACCGAGGAAGAACTGCTCAAGGGCTTGGAAGGCCTCGCGCCGCCGGAAGAGCAGCCCGAAGAGGACGAATAA
PROTEIN sequence
Length: 131
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSPLTIDRDNDKNPVVSLREIAETTISPEDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVSVERMTEEELLKGLEGLAPPEEQPEEDE*