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SCNpilot_expt_1000_bf_scaffold_3704_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3704_curated_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..305
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PB88_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38806.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
patatin
SCNpilot_expt_1000_bf_scaffold_3704_curated_2

Not on your lists

comp(209..817)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AFG9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD60492.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_3704_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1263..1844
DNA (582bp) protein (194aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PH02_9BRAD
SCNpilot_expt_1000_bf_scaffold_3704_curated_4
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2440..2547
DNA (108bp) protein (36aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TDH9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE04517.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3704_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3386..3652
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003029D0E
Uncharacterized protein {ECO:0000313|EMBL:EKS38338.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07126
SCNpilot_expt_1000_bf_scaffold_3704_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3655..4254)
DNA (600bp) protein (200aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA04_9BRAD
Cellulose synthase operon protein C {ECO:0000313|EMBL:CEG07762.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3704_curated_7
unknown

Not on your lists

5368..5652
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3704_curated_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6678..8183
DNA (1506bp) protein (502aa)
Putative outer membrane protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QP18_9BRAD
Putative outer membrane protein {ECO:0000313|EMBL:EGP07101.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative Omp2b porin
SCNpilot_expt_1000_bf_scaffold_3704_curated_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8565..9461)
DNA (897bp) protein (299aa)
hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002E98D46
Alpha/beta hydrolase fold-containing protein {ECO:0000313|EMBL:EGP07100.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_3704_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9618..11849)
DNA (2232bp) protein (744aa)
lytic transglycosylase; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PC84_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38334.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3704_curated_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12070..12960
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Bradyrhizobiaceae RepID=F7QP15_9BRAD
SCNpilot_expt_1000_bf_scaffold_3704_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12987..13352
DNA (366bp) protein (122aa)
Large-conductance mechanosensitive channel n=2 Tax=Bradyrhizobiaceae RepID=F7QP14_9BRAD
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
large-conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_3704_curated_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13537..14010
DNA (474bp) protein (158aa)
SsrA-binding protein n=2 Tax=Oligotropha carboxidovorans RepID=SSRP_OLICO
smpB; SsrA-binding protein; K03664 SsrA-binding protein
SsrA-binding protein {ECO:0000255|HAMAP-Rule:MF_00023}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_3704_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14063..14638
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFJ4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38330.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
bcpB; BcpB protein
SCNpilot_expt_1000_bf_scaffold_3704_curated_15
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14635..15360)
DNA (726bp) protein (242aa)
Eracil-DNA glycosylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QP11_9BRAD
Eracil-DNA glycosylase {ECO:0000313|EMBL:EGP07094.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
uracil-DNA glycosylase superfamily protein
SCNpilot_expt_1000_bf_scaffold_3704_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16455..16847
DNA (393bp) protein (131aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATC
rnpO; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6W3_9BRAD
SCNpilot_expt_1000_bf_scaffold_3704_curated_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17022..19301
DNA (2280bp) protein (760aa)
(p)ppGpp synthetase I SpoT/RelA; K00951 GTP pyrophosphokinase [EC:2.7.6.5]
RelA/SpoT family protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P8B8_9BRAD
RelA/SpoT family protein {ECO:0000313|EMBL:EKS38792.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_3704_curated_18
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19332..20099
DNA (768bp) protein (256aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
pdxJ; pyridoxal phosphate biosynthetic protein PdxJ; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2]
Pyridoxine 5'-phosphate synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PB76_9BRAD
SCNpilot_expt_1000_bf_scaffold_3704_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20334..20516
DNA (183bp) protein (61aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071085}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071082};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7); K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
4''''-phosphopantetheinyl transferase n=1 Tax=Afipia birgiae RepID=UPI00031F0454
SCNpilot_expt_1000_bf_scaffold_3704_curated_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20724..21482
DNA (759bp) protein (253aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
signal peptidase I; K03100 signal peptidase I [EC:3.4.21.89]
Signal peptidase I n=2 Tax=Bradyrhizobiaceae RepID=F7QP04_9BRAD
SCNpilot_expt_1000_bf_scaffold_3704_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21479..22291
DNA (813bp) protein (271aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3]
Ribonuclease 3 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6V9_9BRAD
SCNpilot_expt_1000_bf_scaffold_3704_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22284..23207
DNA (924bp) protein (308aa)
GTPase Era n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9X9_9BRAD
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
era; GTP-binding protein Era; K03595 GTP-binding protein Era
SCNpilot_expt_1000_bf_scaffold_3704_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23204..23605
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFI6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38320.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3704_curated_24
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23652..24401
DNA (750bp) protein (250aa)
DNA repair protein RecO n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PGY5_9BRAD
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
SCNpilot_expt_1000_bf_scaffold_3704_curated_25
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24504..26726
DNA (2223bp) protein (741aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
parC; DNA topoisomerase 4 subunit A (EC:5.99.1.-); K02621 topoisomerase IV subunit A [EC:5.99.1.-]
DNA topoisomerase 4 subunit A n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNZ9_9BRAD
SCNpilot_expt_1000_bf_scaffold_3704_curated_26
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26736..27680)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JF53_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB65408.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3704_curated_27
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28041..28535
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PK96_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38783.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
virR; protein VirR
SCNpilot_expt_1000_bf_scaffold_3704_curated_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28632..30014
DNA (1383bp) protein (461aa)
Divalent metal cation transporter MntH n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PB68_9BRAD
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
manganese transport protein MntH; K03322 manganese transport protein
Displaying 28 items

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