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SCNpilot_expt_1000_bf_scaffold_872_curated_5

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(5276..5767)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJT8_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 93.3
  • Coverage: 163.0
  • Bit_score: 295
  • Evalue 4.10e-77
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 163.0
  • Bit_score: 295
  • Evalue 5.70e-77
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 83.2
  • Coverage: 161.0
  • Bit_score: 262
  • Evalue 7.10e-68

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Taxonomy

Afipia clevelandensis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 492
ATGAGCAGCGATTTTCGACACAATGTCGAGACCATGATCCCGGCCCTGCGGCGCTATGCCCGCGCGCTGGCGCGGGACCGCGATATCGCCGACGATCTGGTGCAGGATACGCTGGTCCGCGCGCTGAGGTCGGAAAAGCTGTTTCTGGGTGGCGACCTGCGGGCATGGCTTTACACCATCCTGACCAACCTCAATCGCAACCGCCGCCGCTCGCTGGCGCGGCAACCGACGATGATGGAACTGCACGACACGAACGCGGACGCATCCGGCACGGAAGCGGAAGGCCGCGATATTTCCCGGGCGCTGCTGACATTGCCGGAGGACCAGCGCGCGGTTCTCCTGCTGGTGGTGCTGGAAGGACTGAGCTATCGCGATGTCGCCGATATTCAGGGCGTCCCCATCGGCACCGTGATGTCGCGCCTCGCCCGTGCGCGGGCGCAGGTCAAGGCGATGCTCGAAGGCGAGCGGCCGATGCTGCGGCGGGTGAAATGA
PROTEIN sequence
Length: 164
MSSDFRHNVETMIPALRRYARALARDRDIADDLVQDTLVRALRSEKLFLGGDLRAWLYTILTNLNRNRRRSLARQPTMMELHDTNADASGTEAEGRDISRALLTLPEDQRAVLLLVVLEGLSYRDVADIQGVPIGTVMSRLARARAQVKAMLEGERPMLRRVK*