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SCNpilot_expt_1000_bf_scaffold_872_curated

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_872_curated_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98..1501)
DNA (1404bp) protein (468aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRI9_AFIFE
SCNpilot_expt_1000_bf_scaffold_872_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2165..3448
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFA0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41292.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K03699 putative hemolysin
SCNpilot_expt_1000_bf_scaffold_872_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3541..4413
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXE7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32110.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_872_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4426..5196)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSH3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41293.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_872_curated_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5276..5767)
DNA (492bp) protein (164aa)
RNA polymerase sigma factor n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJT8_9BRAD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_872_curated_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5958..6779
DNA (822bp) protein (274aa)
enoyl-ACP reductase (EC:1.3.1.9); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] 1 {ECO:0000313|EMBL:AEI05898.1}; EC=1.3.1.9 {ECO:0000313|EMBL:AEI05898.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
enoyl-ACP reductase n=1 Tax=Afipia birgiae RepID=UPI0002D570DF
SCNpilot_expt_1000_bf_scaffold_872_curated_7
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6924..7523
DNA (600bp) protein (200aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase-like protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJU1_9BRAD
Phosphoglycerate mutase-like protein {ECO:0000313|EMBL:EGP08556.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_872_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7664..8746
DNA (1083bp) protein (361aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
aroC; chorismate synthase AroC (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
chorismate synthase n=1 Tax=Afipia birgiae RepID=UPI000310EC00
SCNpilot_expt_1000_bf_scaffold_872_curated_9
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8782..10791
DNA (2010bp) protein (670aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HVZ3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB17257.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
glycosyl transferase family protein
SCNpilot_expt_1000_bf_scaffold_872_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10822..11601
DNA (780bp) protein (260aa)
adenylate cyclase n=1 Tax=Afipia birgiae RepID=UPI00031AAB10
Uncharacterized protein {ECO:0000313|EMBL:EKS41299.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
adenylate cyclase protein
SCNpilot_expt_1000_bf_scaffold_872_curated_11
unknown

Not on your lists

comp(11963..12154)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_872_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12616..13797
DNA (1182bp) protein (394aa)
Chloride channel protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJU5_9BRAD
Chloride channel protein {ECO:0000313|EMBL:EGP08560.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
chloride channel protein; K03281 chloride channel protein, CIC family
SCNpilot_expt_1000_bf_scaffold_872_curated_13
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13967..15508
DNA (1542bp) protein (514aa)
Diguanylate cyclase n=1 Tax=Burkholderia terrae BS001 RepID=I5CEY7_9BURK
Diguanylate cyclase {ECO:0000313|EMBL:KJK14069.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_872_curated_14
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15621..17312)
DNA (1692bp) protein (564aa)
chemotaxis protein n=1 Tax=Afipia birgiae RepID=UPI0002F46344
Uncharacterized protein {ECO:0000313|EMBL:EKS32119.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_872_curated_15
unknown

Not on your lists

comp(17413..17523)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_872_curated_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17603..19285)
DNA (1683bp) protein (561aa)
chemotaxis protein n=1 Tax=Afipia birgiae RepID=UPI000306D7B0
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EGP08563.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_872_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19617..20444
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000310A338
Uncharacterized protein {ECO:0000313|EMBL:EKS41304.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_872_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20579..21823)
DNA (1245bp) protein (415aa)
RNA methyltransferase (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
RNA methyltransferase n=1 Tax=Afipia birgiae RepID=UPI00031A554B
RNA methyltransferase {ECO:0000313|EMBL:EGP08566.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_872_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21823..22062)
DNA (240bp) protein (80aa)
hypothetical protein; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
hemolysin n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D34D1
Hemolysin TlyA family protein {ECO:0000313|EMBL:EKS32123.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_872_curated_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22696..24633)
DNA (1938bp) protein (646aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
dxs1; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Bradyrhizobiaceae RepID=F7QJV3_9BRAD
SCNpilot_expt_1000_bf_scaffold_872_curated_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25061..25312)
DNA (252bp) protein (84aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXG3_9BRAD
exodeoxyribonuclease small subunit
SCNpilot_expt_1000_bf_scaffold_872_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25434..26363)
DNA (930bp) protein (310aa)
acetoin utilization protein n=1 Tax=Afipia birgiae RepID=UPI00030E41F9
Uncharacterized protein {ECO:0000313|EMBL:EKS41309.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_872_curated_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26401..27165)
DNA (765bp) protein (255aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EGP08571.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EGP08571.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
enoyl-CoA hydratase n=1 Tax=Afipia birgiae RepID=UPI00031872A1
enoyl-CoA hydratase/isomerase
SCNpilot_expt_1000_bf_scaffold_872_curated_24
unknown

Not on your lists

27199..27288
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_872_curated_25
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27301..28248
DNA (948bp) protein (316aa)
glyoxalase n=1 Tax=Afipia birgiae RepID=UPI00031527BD
Uncharacterized protein {ECO:0000313|EMBL:EKS32128.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Glyoxalase/bleomycin resistance protein/dioxygenase; K15975 glyoxalase family protein
SCNpilot_expt_1000_bf_scaffold_872_curated_26
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28437..29864)
DNA (1428bp) protein (476aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EGP08573.1}; EC=1.3.8.- {ECO:0000313|EMBL:EGP08573.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Acyl-CoA dehydrogenase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJV8_9BRAD
acyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_872_curated_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31699..32805)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGN6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29662.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
transglutaminase domain protein
SCNpilot_expt_1000_bf_scaffold_872_curated_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32831..33529)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKM0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29661.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
thioredoxin family protein
SCNpilot_expt_1000_bf_scaffold_872_curated_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33732..34781
DNA (1050bp) protein (350aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
selD; selenophosphate synthase SelD (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3]
Selenide, water dikinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W8_9BRAD
SCNpilot_expt_1000_bf_scaffold_872_curated_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34795..36210)
DNA (1416bp) protein (472aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
selA; L-seryl-tRNA selenium transferase SelA (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ07_AFIFE
Displaying items 1-30 of 47 in total

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