name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_493_curated_1
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2..124
|
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
Elongation factor Tu n=2 Tax=Bradyrhizobium RepID=H5YM82_9BRAD
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
240..548
|
30S ribosomal protein S10 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NFL9_AFIFE
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
645..1364
|
50S ribosomal protein L3 n=2 Tax=Oligotropha carboxidovorans RepID=RL3_OLICO
rbh
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
50S ribosomal protein L3 {ECO:0000255|HAMAP-Rule:MF_01325}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1366..1986
|
50S ribosomal protein L4 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAE3_9BRAD
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1983..2282
|
50S ribosomal protein L23 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH68_AFIFE
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2294..3127
|
50S ribosomal protein L2 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJP8_AFIFE
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_7
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3140..3418
|
30S ribosomal protein S19 n=5 Tax=Bradyrhizobiaceae RepID=RS19_BRADU
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3429..3815
|
50S ribosomal protein L22 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG06_9BRAD
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3835..4533
|
30S ribosomal protein S3 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCN5_9BRAD
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4568..4981
|
50S ribosomal protein L16 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH75_AFIFE
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4987..5202
|
50S ribosomal protein L29 n=1 Tax=Afipia birgiae RepID=UPI0002E310FF
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000313|EMBL:AEI07022.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5213..5443
|
30S ribosomal protein S17 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NFN1_AFIFE
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_13
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
5597..5965
|
50S ribosomal protein L14 n=4 Tax=Bradyrhizobiaceae RepID=RL14_NITHX
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5965..6279
|
50S ribosomal protein L24 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WVT2_9BRAD
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6272..6829
|
50S ribosomal protein L5 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJD9_9BRAD
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6878..7183
|
30S ribosomal protein S14 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7C0_9BRAD
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_17
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7196..7594
|
30S ribosomal protein S8 n=1 Tax=Afipia birgiae RepID=UPI000300831D
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7608..8141
|
50S ribosomal protein L6 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NB50_AFIFE
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8153..8515
|
50S ribosomal protein L18 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCM5_9BRAD
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8564..9133
|
30S ribosomal protein S5 n=2 Tax=Bradyrhizobiaceae RepID=F7QPX9_9BRAD
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9162..9368
|
50S ribosomal protein L30 n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PKN3_9BRAD
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_22
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9380..9871
|
50S ribosomal protein L15 n=2 Tax=Oligotropha carboxidovorans RepID=RL15_OLICO
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_23
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9992..11323
|
Protein translocase subunit SecY n=2 Tax=Oligotropha carboxidovorans RepID=B6JEY5_OLICO
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Preprotein translocase subunit SecY {ECO:0000313|EMBL:AEI07010.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_24
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11320..12330
|
Adenylate kinase Adk {ECO:0000313|EMBL:AEI07009.1}; EC=2.7.4.3 {ECO:0000313|EMBL:AEI07009.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Adenylate kinase n=2 Tax=Oligotropha carboxidovorans RepID=B6JEY6_OLICO
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12488..12856
|
30S ribosomal protein S13 n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=RS13_RHOPS
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12965..13354
|
30S ribosomal protein S11 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJR6_AFIFE
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13411..14487
|
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAC0_9BRAD
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_28
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14606..15022
|
50S ribosomal protein L17 n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003639038
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15115..15726
|
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNL9_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27793.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ankyrin
|
|
SCNpilot_expt_1000_bf_scaffold_493_curated_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15864..16658
|
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH90_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27794.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
short-chain dehydrogenase/reductase family protein
|