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SCNpilot_expt_1000_bf_scaffold_142_curated

Search features with annotation key words

Displaying items 1-30 of 468 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_142_curated_1
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

103..1200
DNA (1098bp) protein (366aa)
5%2C10-methylenetetrahydromethanopterin reductase {ECO:0000313|EMBL:CKH46779.1}; EC=1.1.98.2 {ECO:0000313|EMBL:CKH46779.1};; EC=1.5.98.2 {ECO:0000313|EMBL:CKH46779.1};; TaxID=1772 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis.;"
5,10-methylenetetrahydromethanopterin reductase; K00320 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase [EC:1.5.99.11]
5,10-methylenetetrahydromethanopterin reductase n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VP18_9EURY
SCNpilot_expt_1000_bf_scaffold_142_curated_2
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1256..2176
DNA (921bp) protein (307aa)
Fahd2a, Fahd2, RGD1563674; fumarylacetoacetate hydrolase domain containing 2A (EC:3.-.-.-)
Fumarylacetoacetate hydrolase family protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4T9_9ARCH
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
SCNpilot_expt_1000_bf_scaffold_142_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2192..3466
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=unclassified candidate division pSL4 RepID=UPI0003709E47
acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_142_curated_4
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3540..5921
DNA (2382bp) protein (794aa)
FO synthase {ECO:0000313|EMBL:EIZ02229.1}; EC=2.5.1.- {ECO:0000313|EMBL:EIZ02229.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
radical SAM protein; K11779 FO synthase [EC:2.5.1.-]
FO synthase n=1 Tax=Ralstonia sp. PBA RepID=I9W1J2_9RALS
SCNpilot_expt_1000_bf_scaffold_142_curated_5
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6037..7239
DNA (1203bp) protein (401aa)
leuA2; 2-isopropylmalate synthase (EC:2.3.3.13); K10977 methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-]
2-isopropylmalate synthase (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZIQ1_9ZZZZ
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
SCNpilot_expt_1000_bf_scaffold_142_curated_6
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7345..8343)
DNA (999bp) protein (333aa)
Transcriptional regulator, AraC family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BXL6_9GAMM
DNA-binding domain-containing protein, AraC-type
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_142_curated_7
Acinetobacter sp. CIP 56.2, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8724..10178
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. CIP 56.2 RepID=N8W9J6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENV08616.1}; TaxID=1144672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. CIP 56.2.;"
aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_142_curated_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10221..11288
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00036D9CC3
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_expt_1000_bf_scaffold_142_curated_9
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11315..12403
DNA (1089bp) protein (363aa)
alcohol dehydrogenase GroES domain-containing protein; K00055 aryl-alcohol dehydrogenase [EC:1.1.1.90]
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2N5_9BACT
Alcohol dehydrogenase {ECO:0000313|EMBL:AGW95773.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCNpilot_expt_1000_bf_scaffold_142_curated_10
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12437..12766
DNA (330bp) protein (110aa)
Cytochrome c, class I n=1 Tax=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) RepID=Q12P77_SHEDO
cytochrome c, class I
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_142_curated_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12792..14291
DNA (1500bp) protein (500aa)
FAD linked oxidase-like n=2 Tax=Saccharopolyspora erythraea RepID=A4FMJ0_SACEN
FAD linked oxidase-like protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_142_curated_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14533..15294)
DNA (762bp) protein (254aa)
GntR domain protein n=2 Tax=Afipia RepID=D6V817_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS29181.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_142_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15504..17159
DNA (1656bp) protein (552aa)
Lactate permease (LctP) family transporter n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNT5_AFIFE
Lactate permease (LctP) family transporter {ECO:0000313|EMBL:EKS29180.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
L-lactate transport; K03303 lactate transporter, LctP family
SCNpilot_expt_1000_bf_scaffold_142_curated_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17245..18408
DNA (1164bp) protein (388aa)
hypothetical protein; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NL50_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29179.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_142_curated_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18420..19244
DNA (825bp) protein (275aa)
Methyl-accepting chemotaxis sensory transducer n=2 Tax=Afipia RepID=D6V820_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS29178.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_142_curated_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19320..21053
DNA (1734bp) protein (578aa)
D-lactate dehydrogenase {ECO:0000256|PIRNR:PIRNR000101}; EC=1.1.1.28 {ECO:0000256|PIRNR:PIRNR000101};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
D-lactate dehydrogenase (EC:1.1.1.28); K03777 D-lactate dehydrogenase [EC:1.1.1.28]
D-lactate dehydrogenase n=2 Tax=Afipia RepID=D6V821_9BRAD
SCNpilot_expt_1000_bf_scaffold_142_curated_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21216..21881
DNA (666bp) protein (222aa)
TenA/Thi-4 family protein; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
TenA/Thi-4 family protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JCA9_OLICO
TenA/Thi-4 family protein {ECO:0000313|EMBL:AEI07469.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_142_curated_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22237..24285
DNA (2049bp) protein (683aa)
Translation elongation factor G n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSI3_AFIFE
Translation elongation factor G {ECO:0000313|EMBL:EKS29173.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fusA; elongation factor G; K02355 elongation factor G
SCNpilot_expt_1000_bf_scaffold_142_curated_19
unknown

Not on your lists

24308..24445
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_142_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24488..24727)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXV0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79389.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09794 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_142_curated_21
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24852..25238)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y6L5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH12705.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_142_curated_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25670..26803
DNA (1134bp) protein (378aa)
Nitrite reductase, copper-containing protein {ECO:0000313|EMBL:EFI52480.1}; EC=1.7.2.1 {ECO:0000313|EMBL:EFI52480.1};; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
nirK2; dissimilatory nitrite reductase (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1] rbh
Nitrite reductase, copper-containing protein n=2 Tax=Afipia RepID=D6V3F0_9BRAD
SCNpilot_expt_1000_bf_scaffold_142_curated_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26859..27749
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3E9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52479.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_142_curated_24
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27800..27973)
DNA (174bp) protein (58aa)
von Willebrand factor type A n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSS0_HYPDA
von Willebrand factor A; K02448 nitric oxide reductase NorD protein
von Willebrand factor type A {ECO:0000313|EMBL:ADJ22405.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_142_curated_25
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28002..29693)
DNA (1692bp) protein (564aa)
von Willebrand factor A n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B1E5_9RHIZ
von Willebrand factor A
von Willebrand factor A {ECO:0000313|EMBL:AGK56783.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_142_curated_26
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29699..30508)
DNA (810bp) protein (270aa)
ATPase AAA n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B3J6_9RHIZ
ATPase AAA
ATPase AAA {ECO:0000313|EMBL:AGK56782.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_142_curated_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30537..31886)
DNA (1350bp) protein (450aa)
Nitric-oxide reductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3E6_9BRAD
Nitric oxide reductase subunit B {ECO:0000313|EMBL:CEG07028.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
nitric-oxide reductase subunit B
SCNpilot_expt_1000_bf_scaffold_142_curated_28
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31900..32352)
DNA (453bp) protein (151aa)
Cytochrome C class I n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9K9_9RHIZ
cytochrome C class I
Cytochrome C class I {ECO:0000313|EMBL:AGK56780.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_142_curated_29
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32513..33103
DNA (591bp) protein (197aa)
Cytochrome C oxidase subunit III n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B000_9RHIZ
cytochrome C oxidase subunit III
Cytochrome C oxidase subunit III {ECO:0000313|EMBL:AGK56779.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_142_curated_30
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33106..33408
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B1E1_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK56778.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Displaying items 1-30 of 468 in total

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