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SCNpilot_expt_1000_bf_scaffold_383_curated

Search features with annotation key words

Displaying items 1-30 of 216 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_383_curated_1
unknown

Not on your lists

comp(432..659)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_383_curated_2
unknown

Not on your lists

comp(695..1066)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_383_curated_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1143..1853)
DNA (711bp) protein (237aa)
NADPH-dependent FMN reductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFI5_NITHX
NADPH-dependent FMN reductase; K11811 arsenical resistance protein ArsH
Bradyrhizobium elkanii strain UASWS1015 Contig141, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53512.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_expt_1000_bf_scaffold_383_curated_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1855..2259)
DNA (405bp) protein (135aa)
arsC; arsenate reductase ArsC (EC:1.20.4.1)
Arsenate reductase ArsC {ECO:0000313|EMBL:AEI08265.1}; EC=1.20.4.1 {ECO:0000313|EMBL:AEI08265.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Arsenate reductase (Glutaredoxin) n=2 Tax=Oligotropha carboxidovorans RepID=B6JKA1_OLICO
SCNpilot_expt_1000_bf_scaffold_383_curated_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2256..3311)
DNA (1056bp) protein (352aa)
Arsenical-resistance protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JKA0_OLICO
arsB; arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
Arsenite efflux pump protein {ECO:0000313|EMBL:AEI08266.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_383_curated_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3314..3841)
DNA (528bp) protein (176aa)
Protein-tyrosine-phosphatase n=2 Tax=Oligotropha carboxidovorans RepID=B6JK99_OLICO
protein-tyrosine-phosphatase
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:AEI08267.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_383_curated_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4324..4647
DNA (324bp) protein (108aa)
Putative transcriptional regulator, ArsR family n=2 Tax=Oligotropha carboxidovorans RepID=F8BR25_OLICM
ArsR family transcriptional regulator
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:AEI08269.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_383_curated_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4697..6064
DNA (1368bp) protein (456aa)
FAD dependent oxidoreductase n=2 Tax=Oligotropha carboxidovorans RepID=B6JK96_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08270.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_383_curated_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6075..7274
DNA (1200bp) protein (400aa)
Major facilitator superfamily MFS_1 n=2 Tax=Oligotropha carboxidovorans RepID=B6JK95_OLICO
major facilitator superfamily protein
Putative MFS transporter protein {ECO:0000313|EMBL:AEI08271.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_383_curated_10
unknown

Not on your lists

7608..7811
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_383_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7911..8219
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003663DF2
Uncharacterized protein {ECO:0000313|EMBL:EYR81357.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_383_curated_12
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8229..8636
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000377D956
Uncharacterized protein {ECO:0000313|EMBL:KCZ53165.1}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_383_curated_13
unknown

Not on your lists

comp(8647..9057)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B563DB
SCNpilot_expt_1000_bf_scaffold_383_curated_14
unknown

Not on your lists

9660..9995
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_383_curated_15
unknown

Not on your lists

comp(9955..10143)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_383_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10548..14309)
DNA (3762bp) protein (1254aa)
nrdJ; vitamin B12-dependent ribonucleotide reductase NrdJ (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Vitamin B12-dependent ribonucleotide reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMW0_9BRAD
Vitamin B12-dependent ribonucleotide reductase {ECO:0000313|EMBL:EKS39698.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_383_curated_17
unknown

Not on your lists

comp(14403..14570)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_383_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15022..15915
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG25_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39699.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_383_curated_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15993..16427)
DNA (435bp) protein (145aa)
BA14K family protein n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JG37_OLICO
BA14K family protein
BA14K family protein {ECO:0000313|EMBL:EFI51797.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_383_curated_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16696..17103
DNA (408bp) protein (136aa)
NADH dehydrogenase (EC:1.6.99.3); K00356 NADH dehydrogenase [EC:1.6.99.3]
NADH:ubiquinone oxidoreductase 17.2 kD subunit n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137U1_RHOPS
NADH:ubiquinone oxidoreductase 17.2 kD subunit {ECO:0000313|EMBL:ABE39648.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_383_curated_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17287..18204
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V652_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG08200.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_383_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18208..18897)
DNA (690bp) protein (230aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase; K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000255|HAMAP-Rule:MF_00688}; EC=2.3.2.6 {ECO:0000255|HAMAP-Rule:MF_00688};; L/F-transferase {ECO:0000255|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000255|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000255|HAMAP-Rule:MF_00688}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=LFTR_RHOPB rbh
SCNpilot_expt_1000_bf_scaffold_383_curated_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18942..20030)
DNA (1089bp) protein (363aa)
Signal transduction histidine kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V654_9BRAD
Signal transduction histidine kinase {ECO:0000313|EMBL:EFI51801.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
two component sensor kinase, signal receiver domain-containing protein
SCNpilot_expt_1000_bf_scaffold_383_curated_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20027..20467)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NCX8_AFIFE
response regulator receiver protein
Uncharacterized protein {ECO:0000313|EMBL:EKS28462.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_383_curated_25
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20460..21986)
DNA (1527bp) protein (509aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Two component sensor kinase n=2 Tax=Oligotropha carboxidovorans RepID=F8BPK6_OLICM
two component sensor kinase
SCNpilot_expt_1000_bf_scaffold_383_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22098..23453)
DNA (1356bp) protein (452aa)
accC; acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase, biotin carboxylase subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJK3_9BRAD
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:EKS39710.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_383_curated_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23493..23987)
DNA (495bp) protein (165aa)
Biotin carboxyl carrier protein of acetyl-CoA carboxylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNL6_9BRAD
Biotin carboxyl carrier protein of acetyl-CoA carboxylase {ECO:0000313|EMBL:EGP07170.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_expt_1000_bf_scaffold_383_curated_28
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24023..24478)
DNA (456bp) protein (152aa)
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase {ECO:0000255|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000255|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000255|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000255|HAMAP-Rule:MF_00169}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
3-dehydroquinate dehydratase n=2 Tax=Oligotropha carboxidovorans RepID=AROQ_OLICO
SCNpilot_expt_1000_bf_scaffold_383_curated_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24715..25482)
DNA (768bp) protein (256aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PAR5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38641.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
DSBA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_383_curated_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25514..26830)
DNA (1317bp) protein (439aa)
peptidase M48 Ste24p n=1 Tax=Afipia birgiae RepID=UPI0002EB0B26
Uncharacterized protein {ECO:0000313|EMBL:EKS39714.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidase M48, Ste24p
Displaying items 1-30 of 216 in total

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