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SCNpilot_expt_1000_bf_scaffold_515_curated

Search features with annotation key words

Displaying items 1-30 of 187 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_515_curated_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

415..1011
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3J9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52529.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_515_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1212..2519)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNR2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41145.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_515_curated_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2662..2874)
DNA (213bp) protein (71aa)
ectoine hydroxylase (ectD) (EC:1.17.-.-); K10674 ectoine hydroxylase [EC:1.14.11.-]
Ectoine hydroxylase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H4V4_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig180, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47336.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_expt_1000_bf_scaffold_515_curated_4
unknown

Not on your lists

comp(3026..3130)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_515_curated_5
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3183..3857)
DNA (675bp) protein (225aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YNJ1_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:EHR06074.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_515_curated_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4077..4688)
DNA (612bp) protein (204aa)
Glutathione S-transferase-like n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IS84_RHOP2
glutathione S-transferase-like protein
Glutathione S-transferase-like {ECO:0000313|EMBL:ABD08926.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_515_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5028..5441
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E0AEC3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD86911.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_515_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6209..6901
DNA (693bp) protein (231aa)
Transcriptional regulator, GntR family n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYC5_RHOP2
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABD06785.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_515_curated_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7165..8340
DNA (1176bp) protein (392aa)
Twin-arginine translocation pathway signal n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYC3_RHOP2
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD06787.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_515_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8527..8982
DNA (456bp) protein (152aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYC2_RHOP2
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ABD06788.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_515_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8979..10226
DNA (1248bp) protein (416aa)
amidohydrolase; K01485 cytosine deaminase [EC:3.5.4.1]
Amidohydrolase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYC0_RHOP2
Amidohydrolase {ECO:0000313|EMBL:ABD06790.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_515_curated_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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10281..11543
DNA (1263bp) protein (421aa)
Asp-tRNAAsn/Glu-tRNAGln amidotransferase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TH36_9RHIZ
amidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_515_curated_13
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11761..12300)
DNA (540bp) protein (180aa)
sarcosine oxidase subunit gamma; K00305 sarcosine oxidase, subunit gamma [EC:1.5.3.1]
Sarcosine oxidase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEB0_9RHIZ
Sarcosine oxidase {ECO:0000313|EMBL:AHB48853.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_515_curated_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12301..15195)
DNA (2895bp) protein (965aa)
putative sarcosine oxidase subunit alpha; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Aminomethyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SED4_9RHIZ
Aminomethyltransferase {ECO:0000313|EMBL:AHB48852.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_515_curated_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15192..15461)
DNA (270bp) protein (90aa)
soxD; sarcosine oxidase subunit D (EC:1.5.3.1); K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
Sarcosine oxidase subunit delta n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDB1_9RHIZ
Sarcosine oxidase subunit delta {ECO:0000313|EMBL:AHB48851.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_515_curated_16
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15472..16713)
DNA (1242bp) protein (414aa)
FAD dependent oxidoreductase (EC:1.4.99.1); K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
Sarcosine oxidase subunit beta n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFP8_9RHIZ
Sarcosine oxidase subunit beta {ECO:0000313|EMBL:AHB48850.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_515_curated_17
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16860..17753
DNA (894bp) protein (298aa)
mgsA; N-methyl glutamate synthase subunit A (EC:2.4.2.-)
glutamine amidotransferase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B26B8
Glutamine amidotransferase {ECO:0000313|EMBL:AHB48849.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_515_curated_18
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17756..18448
DNA (693bp) protein (231aa)
protein glxC n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A0D0A
glutamate synthase subunit alpha domain-containing protein
Glutamate synthase subunit alpha domain-containing protein {ECO:0000313|EMBL:AGK56698.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_515_curated_19
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18498..19820
DNA (1323bp) protein (441aa)
glutamate synthase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036AF084
Glutamate synthase {ECO:0000313|EMBL:AHB48847.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
glxD; glutamate synthase family protein
SCNpilot_expt_1000_bf_scaffold_515_curated_20
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19861..21171
DNA (1311bp) protein (437aa)
gmas; gamma-glutamylmethylamide synthetase (EC:6.3.1.-); K01915 glutamine synthetase [EC:6.3.1.2]
Gamma-glutamylmethylamide synthetase {ECO:0000313|EMBL:CCB67575.1}; EC=6.3.1.- {ECO:0000313|EMBL:CCB67575.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Gamma-glutamylmethylamide synthetase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JB53_HYPSM
SCNpilot_expt_1000_bf_scaffold_515_curated_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21174..22064
DNA (891bp) protein (297aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
Bifunctional protein FolD {ECO:0000255|HAMAP-Rule:MF_01576}; Includes:; Methylenetetrahydrofolate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=1.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01576};; Includes:; Methenyltetrahydrofolate cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=3.5.4.9 {ECO:0000255|HAMAP-Rule:MF_01576};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM
Bifunctional protein FolD n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=FOLD_AZOC5
SCNpilot_expt_1000_bf_scaffold_515_curated_22
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22094..22951
DNA (858bp) protein (286aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
formyltetrahydrofolate deformylase; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10]
Formyltetrahydrofolate deformylase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C6H9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_515_curated_23
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23177..23908
DNA (732bp) protein (244aa)
Helix-turn-helix domain protein n=8 Tax=Rhizobium meliloti RepID=F6BR99_SINMB
putative HTH-type transcriptional regulator
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:CDH87507.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_515_curated_24
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24012..25358)
DNA (1347bp) protein (449aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUW0_AFIFE
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_515_curated_25
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25355..26020)
DNA (666bp) protein (222aa)
FeuP protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM5_OLICO
Transcriptional regulator {ECO:0000313|EMBL:ETR75634.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
signal transduction response regulator
SCNpilot_expt_1000_bf_scaffold_515_curated_26
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26023..26331)
DNA (309bp) protein (103aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BGW1_OLICM
Peptidase {ECO:0000313|EMBL:ETR75635.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_515_curated_27
unknown

Not on your lists

comp(26406..26531)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_515_curated_28
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26665..26934
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM8_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI04998.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_515_curated_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27018..28052)
DNA (1035bp) protein (345aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V749_9BRAD
Nitrilase {ECO:0000313|EMBL:CEG09466.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
aliphatic nitrilase
SCNpilot_expt_1000_bf_scaffold_515_curated_30
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28193..29101
DNA (909bp) protein (303aa)
50S ribosomal protein L15 n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6F7_9BRAD
LysR family transcriptional regulator {ECO:0000313|EMBL:KJC54403.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
transcriptional regulatory protein LysR family
Displaying items 1-30 of 187 in total

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