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SCNpilot_expt_1000_bf_scaffold_823_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_823_curated_1
unknown

Not on your lists

2..73
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_823_curated_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

311..493
DNA (183bp) protein (61aa)
Conserved domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJT9_OLICO
hypothetical protein; K09946 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05285.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_823_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(602..2710)
DNA (2109bp) protein (703aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFX2_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS37243.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_823_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3116..4156
DNA (1041bp) protein (347aa)
mepA; penicillin-insensitive murein endopeptidase; K07261 penicillin-insensitive murein endopeptidase [EC:3.4.24.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P8Z0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37244.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_823_curated_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4327..4536
DNA (210bp) protein (70aa)
Molybdenum-pterin binding domain-containing protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NTB9_AFIFE
Molybdenum-pterin binding domain-containing protein {ECO:0000313|EMBL:EKS30690.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
molybdenum-pterin-binding protein
SCNpilot_expt_1000_bf_scaffold_823_curated_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4758..5582
DNA (825bp) protein (275aa)
Molybdenum ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4U7_9BRAD
Molybdenum ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:EFI52977.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
modA; molybdate ABC transporter periplasmic molybdate-binding protein; K02020 molybdate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_823_curated_7
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5605..6300
DNA (696bp) protein (232aa)
ModB n=1 Tax=Bradyrhizobium japonicum RepID=Q8VRF6_BRAJP
ModB {ECO:0000313|EMBL:AAL38175.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
modB; molybdate ABC transporter permease; K02018 molybdate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_823_curated_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6303..6977
DNA (675bp) protein (225aa)
Molybdate-transporting ATPase {ECO:0000256|SAAS:SAAS00055222}; EC=3.6.3.29 {ECO:0000256|SAAS:SAAS00055222};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
molybdenum import ATP-binding protein ModC 1 (EC:3.6.3.29); K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29]
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4U9_9BRAD
SCNpilot_expt_1000_bf_scaffold_823_curated_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6961..7821)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P1P6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33615.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_823_curated_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7880..8890
DNA (1011bp) protein (337aa)
ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI00030D428D
Uncharacterized protein {ECO:0000313|EMBL:EKS33616.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ABC transporter permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_823_curated_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8887..9672
DNA (786bp) protein (262aa)
hemin ABC transporter ATP-binding protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NWV4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30683.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_823_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9861..11666)
DNA (1806bp) protein (602aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P597_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33618.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
potassium/proton antiporter; K11105 cell volume regulation protein A
SCNpilot_expt_1000_bf_scaffold_823_curated_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11897..13216
DNA (1320bp) protein (440aa)
MscS Mechanosensitive ion channel n=3 Tax=Oligotropha carboxidovorans RepID=B6JJV0_OLICO
mechanosensitive ion channel MscS
Mechanosensitive ion channel MscS {ECO:0000313|EMBL:AEI05274.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_823_curated_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13339..14166
DNA (828bp) protein (276aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
map; methionine aminopeptidase Map (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18]
methionine aminopeptidase n=1 Tax=Afipia birgiae RepID=UPI0003088F6C
SCNpilot_expt_1000_bf_scaffold_823_curated_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14272..14991
DNA (720bp) protein (240aa)
DNA repair protein RadC n=2 Tax=Afipia RepID=K8NWU8_AFIFE
DNA repair protein RadC {ECO:0000313|EMBL:EKS30678.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
radC; DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_expt_1000_bf_scaffold_823_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15336..16073)
DNA (738bp) protein (246aa)
peptidase n=1 Tax=Afipia birgiae RepID=UPI0002DB2E4B
Uncharacterized protein {ECO:0000313|EMBL:EKS37256.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_823_curated_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16092..17075)
DNA (984bp) protein (328aa)
D-isomer specific 2-hydroxyacid dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P5A1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33623.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_823_curated_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17097..17933)
DNA (837bp) protein (279aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR29_NITHX
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABE61318.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_823_curated_19
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18153..19154)
DNA (1002bp) protein (334aa)
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y2X3_9RHIZ
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein {ECO:0000313|EMBL:EMS41502.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_823_curated_20
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19181..20809)
DNA (1629bp) protein (543aa)
thiamine pyrophosphate binding domain-containing protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
acetolactate synthase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003454D38
Thiamine pyrophosphate protein TPP binding domain protein {ECO:0000313|EMBL:ACB27920.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_expt_1000_bf_scaffold_823_curated_21
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20917..21687)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003089848
Nitrate ABC transporter ATPase {ECO:0000313|EMBL:KJC57722.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_823_curated_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21722..22822)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWR7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33626.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
perplasmic binding protein of ABC transporter
SCNpilot_expt_1000_bf_scaffold_823_curated_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22961..23773
DNA (813bp) protein (271aa)
putative amidohydrolase; K01470 creatinine amidohydrolase [EC:3.5.2.10]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NK22_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30672.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_823_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23881..24159
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003604FC1
Uncharacterized protein {ECO:0000313|EMBL:EKS37262.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_823_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24275..25111)
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VM86_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU45819.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_expt_1000_bf_scaffold_823_curated_26
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25351..27438
DNA (2088bp) protein (696aa)
Putative carbohydrate-selective porin n=2 Tax=Oligotropha carboxidovorans RepID=F8BIS1_OLICM
putative carbohydrate-selective porin
Putative carbohydrate-selective porin {ECO:0000313|EMBL:AEI05183.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_823_curated_27
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28037..29662)
DNA (1626bp) protein (542aa)
Ferredoxin-dependent glutamate synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0B2_9BRAD
Ferredoxin-dependent glutamate synthase {ECO:0000313|EMBL:EFI53142.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ferredoxin-dependent glutamate synthase
SCNpilot_expt_1000_bf_scaffold_823_curated_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29921..30664)
DNA (744bp) protein (248aa)
Transcriptional regulator, GntR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9E1_9BRAD
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFI50779.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative UbiC transcription regulator-associated
SCNpilot_expt_1000_bf_scaffold_823_curated_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30783..31769)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMZ7_AFIFE
(2R)-3-sulfolactate dehydrogenase (NADP(+)) {ECO:0000313|EMBL:CEG08816.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
malate/L-lactate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_823_curated_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31766..32692)
DNA (927bp) protein (309aa)
serA1; D-3-phosphoglycerate dehydrogenase SerA (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
Phosphoglycerate dehydrogenase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIM4_AFIFE
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EKS28911.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Displaying items 1-30 of 39 in total

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