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SCNpilot_expt_1000_bf_scaffold_899_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_899_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..221)
DNA (219bp) protein (73aa)
arcC; carbamate kinase ArcC (EC:2.7.2.2); K00926 carbamate kinase [EC:2.7.2.2]
carbamate kinase n=1 Tax=Afipia birgiae RepID=UPI0002FC0544
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_899_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(290..1882)
DNA (1593bp) protein (531aa)
Gamma-glutamyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLG4_9BRAD
Gamma-glutamyltransferase {ECO:0000313|EMBL:EKS41619.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Gamma-glutamyltranspeptidase protein
SCNpilot_expt_1000_bf_scaffold_899_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2122..3093)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTA9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41618.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_899_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3271..4029)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG51_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41617.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_899_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4278..5474)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ97_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41616.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
codAb; cytosine deaminase
SCNpilot_expt_1000_bf_scaffold_899_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5640..6857
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLF9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41614.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1
SCNpilot_expt_1000_bf_scaffold_899_curated_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7138..8349
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PP23_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42579.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_899_curated_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8366..9559)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NU64_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31000.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
NnrS; K07234 uncharacterized protein involved in response to NO
SCNpilot_expt_1000_bf_scaffold_899_curated_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9668..10327)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F97C3E
Alternative oxidase {ECO:0000313|EMBL:CEG07034.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
oxidase
SCNpilot_expt_1000_bf_scaffold_899_curated_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10545..11249
DNA (705bp) protein (235aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3E1_9BRAD
Anaerobic regulatory protein {ECO:0000313|EMBL:CEG07033.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
nnrR; Nitrite and nitric oxide reductase transcriptional regulator (Crp/Fnr family)
SCNpilot_expt_1000_bf_scaffold_899_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11560..13830
DNA (2271bp) protein (757aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F07B91
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:ADU42447.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_12
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13895..14866
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E69049
ssuA; putative sulfonate/nitrate transport system substrate-binding protein
Putative sulfonate/nitrate transport system substrate-binding protein {ECO:0000313|EMBL:CCD02317.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_899_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14863..15681
DNA (819bp) protein (273aa)
ABC transporter permease n=1 Tax=Rhizobium radiobacter RepID=UPI00035D4FE2
ABC transporter permease {ECO:0000313|EMBL:EPR19946.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
anion ABC transporter permease; K02050 NitT/TauT family transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_899_curated_14
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15663..16415
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EF6151
anion ABC transporter ATPase; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter, nucleotide binding/ATPase protein (Anion) {ECO:0000313|EMBL:AAK89036.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16412..16879
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030F67F9
Uncharacterized protein {ECO:0000313|EMBL:EHH07100.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_899_curated_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17056..17586
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030F67F9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJX85872.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_17
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17699..19084
DNA (1386bp) protein (462aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hemN; oxygen-independent coproporphyrinogen-III oxidase HemN (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
coproporphyrinogen III oxidase n=1 Tax=Afipia birgiae RepID=UPI00037B1429
SCNpilot_expt_1000_bf_scaffold_899_curated_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19081..19491)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030E0A2C
Uncharacterized protein {ECO:0000313|EMBL:EFI52448.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_899_curated_19
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19532..20509)
DNA (978bp) protein (326aa)
Peptidase U32 n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JBV7_OLICO
peptidase U32
Peptidase U32 {ECO:0000313|EMBL:AEI07612.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_20
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20540..21517)
DNA (978bp) protein (326aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-]
protease n=1 Tax=Afipia birgiae RepID=UPI0002F82EEA
Peptidase U32 {ECO:0000313|EMBL:AEI07613.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21508..22056)
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130E5_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41544.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_22
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22138..23700
DNA (1563bp) protein (521aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-); K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]
3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {ECO:0000313|EMBL:AEI07615.1}; EC=4.1.1.- {ECO:0000313|EMBL:AEI07615.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JBV4_OLICO
SCNpilot_expt_1000_bf_scaffold_899_curated_23
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23692..24720)
DNA (1029bp) protein (343aa)
glycine oxidase ThiO; K03153 glycine oxidase [EC:1.4.3.19]
Glycine oxidase ThiO n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JBV3_OLICO
Thiamine biosynthesis oxidoreductase ThiO {ECO:0000313|EMBL:AEI07616.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_24
bacterium YEK0313, Bacteria

Not on your lists

comp(24886..25791)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000364050A
Uncharacterized protein {ECO:0000313|EMBL:CEJ14498.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_899_curated_25
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25778..26365)
DNA (588bp) protein (196aa)
Bll7711 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89CT4_BRADU
Membrane protein {ECO:0000313|EMBL:ETR77140.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_899_curated_26
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26439..27248)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYD8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35004.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_899_curated_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27475..27924
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGL0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64637.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_28
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27967..29274)
DNA (1308bp) protein (436aa)
Voltage-gated chloride channel n=3 Tax=Oligotropha carboxidovorans RepID=B6JH96_OLICO
putative chloride channel family protein
Putative chloride channel family protein {ECO:0000313|EMBL:AEI06361.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_899_curated_29
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30477..31343
DNA (867bp) protein (289aa)
UPI0003CE312E related cluster n=1 Tax=unknown RepID=UPI0003CE312E
Spore coat protein U {ECO:0000313|EMBL:ESY67540.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
Spore coat U domain-containing protein
SCNpilot_expt_1000_bf_scaffold_899_curated_30
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31393..33804)
DNA (2412bp) protein (804aa)
Fimbrial biogenesis outer membrane usher protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y820_MESOW
fimbrial biogenesis outer membrane usher protein; K07347 outer membrane usher protein
Fimbrial biogenesis outer membrane usher protein {ECO:0000313|EMBL:AEH86402.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Displaying items 1-30 of 35 in total

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