ggKbase home page

SCNpilot_expt_1000_bf_scaffold_601_curated

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_601_curated_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(714..1607)
DNA (894bp) protein (298aa)
chitooligosaccharide deacetylase (EC:3.5.1.-)
Uncharacterized conserved protein id=3830375 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_2
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(1788..2942)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Bacillus azotoformans LMG 9581 RepID=K6CVP8_BACAZ
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(2951..3865)
DNA (915bp) protein (305aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003730EBA
Tax=RBG_16_Actinobacteria_68_12_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_4
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(3869..4669)
DNA (801bp) protein (267aa)
ketopantoate reductase (EC:1.1.1.169)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003730EBA
Tax=RBG_16_Actinobacteria_68_12_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5280..5957
DNA (678bp) protein (226aa)
NADPH-dependent F420 reductase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1S7_STAND
NADPH-dependent F420 reductase; K06988
NADPH-dependent F420 reductase {ECO:0000313|EMBL:ADH91502.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_601_curated_6
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6029..7207
DNA (1179bp) protein (393aa)
acyl-CoA dehydrogenase domain-containing protein; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4M3_LEPCP
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACB33462.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_601_curated_7
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7428..8375)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI000360BA5B
Contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88555.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
Transcriptional regulator, AraC family
SCNpilot_expt_1000_bf_scaffold_601_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9316..10128
DNA (813bp) protein (271aa)
hypothetical protein; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
Coenzyme F420-0 gamma-glutamyl ligase {ECO:0000313|EMBL:ABD09094.1}; EC=6.3.2.- {ECO:0000313|EMBL:ABD09094.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000381F660
SCNpilot_expt_1000_bf_scaffold_601_curated_9
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10292..11074
DNA (783bp) protein (261aa)
LPPG domain-containing protein containing protein; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
Lactate transferase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LCT0_9RHOB
Lactate transferase {ECO:0000313|EMBL:EJW11048.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_expt_1000_bf_scaffold_601_curated_10
Komagataeibacter hansenii, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11071..11865
DNA (795bp) protein (265aa)
2-phospho-L-lactate guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114}; Short=LP guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114};; EC=2.7.7.68 {ECO:0000256|HAMAP-Rule:MF_02114};; TaxID=714995 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter hansenii ATCC 23769.;"
hypothetical protein; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68]
2-phospho-L-lactate guanylyltransferase n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QEF4_GLUHA
SCNpilot_expt_1000_bf_scaffold_601_curated_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

11990..12886
DNA (897bp) protein (299aa)
carbon monoxide dehydrogenase, medium subunit; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
carbon-monoxide dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI000378AB05
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_12
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12879..13379
DNA (501bp) protein (167aa)
(2Fe-2S)-binding domain-containing protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
(2Fe-2S)-binding domain-containing protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGF2_THEM7
(2Fe-2S)-binding domain-containing protein {ECO:0000313|EMBL:ADU51604.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
SCNpilot_expt_1000_bf_scaffold_601_curated_13

Not on your lists

13370..16501
DNA (3132bp) protein (1044aa)
Putative aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein n=1 Tax=uncultured bacterium RepID=B1A2D3_9BACT
Putative aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:ABZ79365.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
SCNpilot_expt_1000_bf_scaffold_601_curated_14
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16517..17470
DNA (954bp) protein (318aa)
ATPase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B7530F
AAA ATPase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_15
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17494..18639
DNA (1146bp) protein (382aa)
CoxE n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B5F03A
VWA containing CoxE family protein; K07161
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_16
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18783..19337
DNA (555bp) protein (185aa)
Carbon monoxide dehydrogenase subunit G n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CCQ8_9RHOB
carbon monoxide dehydrogenase subunit G superfamily
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19375..20487
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000368AEBC
Putative AraC-family transcriptional regulator {ECO:0000313|EMBL:GAO20698.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_601_curated_18
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21099..23435)
DNA (2337bp) protein (779aa)
xdhA1; xanthine dehydrogenase, molybdenum binding subunit (EC:1.17.1.4); K00087 xanthine dehydrogenase molybdenum-binding subunit [EC:1.17.1.4]
Xanthine dehydrogenase, molybdenum binding subunit n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R756_CUPTR
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_19
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23956..24825)
DNA (870bp) protein (290aa)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KDL0_9FIRM
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_20
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25034..26029)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000375BE29
padX2; molybdopterin oxidoreductase membrane anchor PadX
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_21
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26019..26633)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000377A0A1
padC2; phenylacetyl-CoA:acceptor oxidoreductase subunit C PadC2
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_601_curated_22
Desulfotignum phosphitoxidans, Desulfotignum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26633..29281)
DNA (2649bp) protein (883aa)
Molybdopterin oxidoreductase, molybdopterin binding subunit {ECO:0000313|EMBL:EMS78186.1}; EC=1.2.7.- {ECO:0000313|EMBL:EMS78186.1};; TaxID=1286635 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfotignum.;" source="Desulfotignum phosphitoxidans DSM 13687.;"
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000378888D
padB2; phenylacetyl-CoA:acceptor oxidoreductase subunit B PadB2
SCNpilot_expt_1000_bf_scaffold_601_curated_23
bacterium YEK0313, Bacteria

Not on your lists


comp(29796..30470)
DNA (675bp) protein (225aa)
30S ribosomal protein S13 n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HLE4_9BRAD
Acetate operon repressor {ECO:0000313|EMBL:CEJ12049.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_601_curated_24
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30875..32509
DNA (1635bp) protein (545aa)
Photosynthetic reaction center M subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H631_9BRAD
Photosynthetic reaction center M subunit {ECO:0000313|EMBL:ERF85272.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
major facilitator superfamily transporter rbh
SCNpilot_expt_1000_bf_scaffold_601_curated_25
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32605..33573
DNA (969bp) protein (323aa)
nit; nitrilase (EC:3.5.5.1); K01501 nitrilase [EC:3.5.5.1] rbh
Nitrilase blr3397; EC=3.5.5.7;; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
Nitrilase blr3397 n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=NITR2_BRADU rbh
SCNpilot_expt_1000_bf_scaffold_601_curated_26
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33582..34262
DNA (681bp) protein (227aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T0X2_JANMA
Uncharacterized protein {ECO:0000313|EMBL:KJC42279.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_601_curated_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34365..35300)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NVB0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30153.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_601_curated_28
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35516..36046)
DNA (531bp) protein (177aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JHZ2_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07160.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_601_curated_29
unknown

Not on your lists

comp(36401..36637)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_601_curated_30
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36664..37059
DNA (396bp) protein (132aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCB3_MESOW
Cupin 2 barrel domain-containing protein
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:AEH86646.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Displaying items 1-30 of 54 in total

View Taxonomy