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SCNpilot_expt_300_bf_scaffold_583_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_583_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..607
DNA (606bp) protein (202aa)
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA5_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
CoA-transferase family III family protein 50 {ECO:0000313|EMBL:GAO24508.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_583_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

639..2483
DNA (1845bp) protein (615aa)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:AEB83646.1}; EC=1.3.99.10 {ECO:0000313|EMBL:AEB83646.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GC72_ALIDK
SCNpilot_expt_300_bf_scaffold_583_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2487..3419)
DNA (933bp) protein (311aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA7_ALIDB
uncharacterized LOC100495675
Uncharacterized protein {ECO:0000313|EMBL:AEB83645.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_583_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3592..4563)
DNA (972bp) protein (324aa)
L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3); K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
L-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:AEB83644.1}; EC=1.1.2.3 {ECO:0000313|EMBL:AEB83644.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
L-lactate dehydrogenase (Cytochrome) n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA8_ALIDB
SCNpilot_expt_300_bf_scaffold_583_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4782..5291)
DNA (510bp) protein (170aa)
OmpA/MotB domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA9_ALIDB
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:AEB83643.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_583_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5315..6550)
DNA (1236bp) protein (412aa)
Diguanylate cyclase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZB0_ALIDB
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ADV00931.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_583_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6550..7071)
DNA (522bp) protein (174aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZB1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83641.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_583_curated_8
unknown

Not on your lists

7669..7881
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_583_curated_9
Sporothrix schenckii, Sporothrix, Ophiostomatales, Sordariomycetidae, Ascomycota, Fungi

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8107..8979
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183) RepID=U7PS25_SPOS1
Uncharacterized protein {ECO:0000313|EMBL:ERS98377.1}; TaxID=1391915 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; mitosporic Ophiostomataceae; Sporothrix.;" source="Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183); (Rose-picker's disease fungus).;"
SCNpilot_expt_300_bf_scaffold_583_curated_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9221..10096)
DNA (876bp) protein (292aa)
methylglyoxal synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036FFB0B
Methylglyoxal synthase {ECO:0000313|EMBL:GAD22447.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_583_curated_11
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10223..10435
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1WAZ9_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34090.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_300_bf_scaffold_583_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11374..12480)
DNA (1107bp) protein (369aa)
Metallophosphoesterase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC1_ALIDB
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:GAO24527.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_583_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12515..18460)
DNA (5946bp) protein (1982aa)
Alpha-2-macroglobulin domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GC56_ALIDK
alpha-2-macroglobulin domain-containing protein; K06894
Alpha-2-macroglobulin domain protein {ECO:0000313|EMBL:AEB83630.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_583_curated_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18591..19565)
DNA (975bp) protein (325aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC3_ALIDB
hypothetical protein
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:GAO24529.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_583_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19591..21051)
DNA (1461bp) protein (487aa)
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1]
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Argininosuccinate lyase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC4_ALIDB
SCNpilot_expt_300_bf_scaffold_583_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21102..22166
DNA (1065bp) protein (355aa)
integral membrane sensor signal transduction histidine kinase; K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3]
Histidine kinase internal region protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC5_ALIDB
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:AEB83627.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_583_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22303..23088
DNA (786bp) protein (262aa)
Lipoprotein, YaeC family n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC6_ALIDB
lipoprotein, YaeC family; K02073 D-methionine transport system substrate-binding protein
Lipoprotein, YaeC family {ECO:0000313|EMBL:ADV00947.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_583_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23216..24847)
DNA (1632bp) protein (544aa)
SpoVR family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC7_ALIDB
SpoVR family protein {ECO:0000313|EMBL:AEB83625.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SpoVR family protein
SCNpilot_expt_300_bf_scaffold_583_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24844..26112)
DNA (1269bp) protein (423aa)
UPF0229 protein Alide_3227 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZC8_ALIDB
hypothetical protein; K09786 hypothetical protein
UPF0229 protein Alide_3227 {ECO:0000256|HAMAP-Rule:MF_01232}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_583_curated_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26135..28057)
DNA (1923bp) protein (641aa)
PrkA AAA domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZC9_ALIDB
Serine protein kinase {ECO:0000313|EMBL:GAO24536.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
prka aaa domain protein; K07180 serine protein kinase
SCNpilot_expt_300_bf_scaffold_583_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28615..29106)
DNA (492bp) protein (164aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Alicycliphilus denitrificans RepID=E8TZD0_ALIDB
transcriptional regulator, rrf2 family; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:ADV00951.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_583_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29201..29923
DNA (723bp) protein (241aa)
Iron-sulfur cluster repair di-iron protein n=2 Tax=Alicycliphilus denitrificans RepID=F4GC47_ALIDK
iron-sulfur cluster repair di-iron protein; K07322 regulator of cell morphogenesis and NO signaling
Iron-sulfur cluster repair di-iron protein {ECO:0000313|EMBL:ADV00952.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_583_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29926..30114
DNA (189bp) protein (63aa)
Globin-like protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZD2_ALIDB
globin-like protein; K06886 hemoglobin
Globin-like protein {ECO:0000313|EMBL:GAO21297.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying 23 items

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