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SCNpilot_expt_300_bf_scaffold_667_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_667_curated_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..973)
DNA (972bp) protein (324aa)
threonine dehydratase, biosynthetic; K01754 threonine dehydratase [EC:4.3.1.19]
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Threonine dehydratase, biosynthetic n=2 Tax=Alicycliphilus denitrificans RepID=E8TZM2_ALIDB
SCNpilot_expt_300_bf_scaffold_667_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1255..1704
DNA (450bp) protein (150aa)
OsmC family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZM3_ALIDB
OsmC family protein; K07397 putative redox protein
OsmC family protein {ECO:0000313|EMBL:GAO26613.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_667_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1715..2299)
DNA (585bp) protein (195aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
putative ubiquinone biosynthesis protein; K06134 ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-]
Putative ubiquinone biosynthesis protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZM4_ALIDB
SCNpilot_expt_300_bf_scaffold_667_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2561..3601
DNA (1041bp) protein (347aa)
Porin Gram-negative type n=2 Tax=Alicycliphilus denitrificans RepID=E8TZM5_ALIDB
porin
Porin {ECO:0000313|EMBL:GAO26616.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_667_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3822..5030
DNA (1209bp) protein (403aa)
Porin Gram-negative type n=2 Tax=Alicycliphilus denitrificans RepID=E8TZM6_ALIDB
porin
Porin Gram-negative type {ECO:0000313|EMBL:AEB83180.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_667_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5198..6181
DNA (984bp) protein (328aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Alicycliphilus denitrificans RepID=E8TZM7_ALIDB
ABC transporter permease; K02033 peptide/nickel transport system permease protein
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEB83181.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_667_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6183..7403
DNA (1221bp) protein (407aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
Amidohydrolase {ECO:0000313|EMBL:ADU98575.1}; EC=3.5.1.32 {ECO:0000313|EMBL:ADU98575.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Amidohydrolase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZM8_ALIDB
SCNpilot_expt_300_bf_scaffold_667_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7501..8412
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Alicycliphilus denitrificans RepID=E8TZM9_ALIDB
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEB83183.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_667_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8414..9388
DNA (975bp) protein (325aa)
peptide ABC transporter ATPase (EC:3.6.3.24); K02031 peptide/nickel transport system ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:AEB83184.1}; EC=3.6.3.24 {ECO:0000313|EMBL:AEB83184.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TZN0_ALIDB
SCNpilot_expt_300_bf_scaffold_667_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9385..10401
DNA (1017bp) protein (339aa)
peptide ABC transporter ATPase (EC:3.6.3.24); K02032 peptide/nickel transport system ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TZN1_ALIDB
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADU98578.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_667_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10444..10938
DNA (495bp) protein (165aa)
PEBP family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZN2_ALIDB
pebp family protein; K06910
YbhB YbcL family protein {ECO:0000313|EMBL:AEB83186.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_667_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10990..11835)
DNA (846bp) protein (282aa)
Helix-turn-helix protein RpiR n=2 Tax=Alicycliphilus denitrificans RepID=E8TZN3_ALIDB
RpiR family transcriptional regulator
Helix-turn-helix protein RpiR {ECO:0000313|EMBL:ADU98580.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_667_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11952..12902
DNA (951bp) protein (317aa)
transaldolase; K00616 transaldolase [EC:2.2.1.2]
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Transaldolase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZN4_ALIDB
SCNpilot_expt_300_bf_scaffold_667_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12899..14434
DNA (1536bp) protein (512aa)
glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852
Glucose-6-phosphate isomerase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZN5_ALIDB
SCNpilot_expt_300_bf_scaffold_667_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14552..15529)
DNA (978bp) protein (326aa)
60 kDa chaperonin n=2 Tax=Alicycliphilus denitrificans RepID=E8TZN6_ALIDB
molecular chaperone GroEL; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying 15 items

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